2B5L

crystal structure of ddb1 in complex with simian virus 5 v protein

• Total interactions analyzed: 6
• Total true interactions: 3
• Strongest Interaction:
  • Chains: A-C
  • Int. Res.: 174
  • Norm. En. per Res.: -2.6759
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-41.1012	-1.8674	-156.688	-199.6566	116	13	0	6316	1	48	46
A-C	-32.7965	-24.747	-408.056	-465.5995	174	15	10	18326	2	43	44
B-D	-10.5036	-11.3934	-354.225	-376.122	175	18	10	17316	2	53	51

Interface residues

• A-B: ALA982B, ALA983A, ALA983B, ARG626A, ARG626B, ARG900A, ARG900B, ARG989A, ARG989B, ASN941A, ASN941B, ASP1115A, ASP1115B, ASP1116B, ASP563A, ASP563B, ASP608A, ASP608B, ASP625A, ASP625B, ASP898A, ASP986A, ASP986B, CYS903A, GLN990A, GLU1019B, GLU580A, GLU580B, GLU585A, GLU585B, GLU892A, GLU892B, GLU896A, GLU896B, GLU902A, GLU902B, GLU939A, GLU939B, GLU987A, GLU987B, GLU988A, GLU988B, GLY1018A, GLY1018B, GLY1117A, GLY1117B, GLY1119A, GLY1119B, GLY583A, GLY583B, GLY584A, GLY584B, GLY940A, GLY940B, ILE564A, ILE564B, ILE586A, ILE586B, LEU1017A, LEU1017B, LEU582A, LEU582B, LYS1121A, LYS627A, LYS627B, LYS628A, LYS628B, LYS823A, LYS823B, LYS879A, LYS879B, LYS897B, LYS936A, LYS936B, MET1120A, MET1120B, MET581A, MET581B, MET938A, MET938B, PHE612A, PHE612B, PHE614A, PHE614B, PRO937A, PRO937B, SER1021A, SER1044A, SER1046A, SER1046B, SER1118A, SER1118B, SER624B, THR1020B, THR562A, THR562B, THR630B, THR894A, THR894B, THR895A, THR895B, THR901A, THR901B, THR984A, THR984B, THR985A, THR985B, TRP561A, TRP893A, TRP893B, TYR613A, TYR613B, TYR935A, TYR935B, VAL629A, VAL629B
• A-C: ALA133C, ALA381A, ALA813A, ALA834A, ALA841A, ALA869A, ALA911A, ALA956A, ALA971A, ARG1080A, ARG114A, ARG149C, ARG188A, ARG220C, ARG327A, ARG722A, ARG889A, ARG928A, ARG947A, ASN1005A, ASN1034A, ASN22C, ASN41C, ASN810A, ASN885A, ASN904A, ASN907A, ASN908A, ASN950A, ASN952A, ASN970A, ASP116C, ASP137A, ASP184A, ASP361A, ASP925A, ASP948A, GLN183A, GLN186A, GLN30C, GLN31C, GLN845A, GLU1002A, GLU1079A, GLU1083A, GLU117A, GLU138C, GLU146C, GLU147C, GLU150C, GLU18C, GLU217C, GLU25C, GLU312A, GLU787A, GLU811A, GLU839A, GLU840A, GLU842A, GLU969A, GLY119A, GLY119C, GLY125C, GLY129C, GLY187A, GLY20C, GLY34C, GLY357A, GLY380A, GLY39C, GLY46C, GLY868A, HIS163A, HIS789A, HIS905A, ILE165A, ILE17C, ILE359A, ILE43C, ILE909A, LEU115C, LEU117C, LEU122C, LEU162A, LEU16C, LEU21C, LEU328A, LEU38C, LEU814A, LEU912A, LEU926A, LEU931A, LEU992A, LYS1081A, LYS120C, LYS128C, LYS131C, LYS134C, LYS40C, LYS60A, LYS723A, LYS844A, LYS867A, MET835A, MET910A, MET927A, MET954A, PHE1003A, PHE27C, PHE382A, PHE949A, PHE972A, PRO115A, PRO123C, PRO148C, PRO185A, PRO358A, PRO44C, PRO45C, PRO721A, PRO838A, PRO843A, PRO951A, SER116A, SER118C, SER124C, SER126C, SER216C, SER29C, SER36C, SER37C, SER720A, SER738A, SER773A, SER815A, SER872A, SER886A, SER929A, SER955A, THR1032A, THR1078A, THR1082A, THR113C, THR118A, THR121C, THR19C, THR23C, THR28C, THR33C, THR35C, THR42C, THR833A, THR887A, TRP953A, TYR127C, TYR175C, TYR26C, TYR812A, TYR837A, TYR871A, TYR906A, TYR913A, VAL1004A, VAL1006A, VAL1033A, VAL114C, VAL130C, VAL24C, VAL32C, VAL360A, VAL47C, VAL836A, VAL870A, VAL930A
• B-D: ALA214B, ALA381B, ALA813B, ALA834B, ALA841B, ALA869B, ALA971B, ARG1080B, ARG111B, ARG114B, ARG149D, ARG188B, ARG220D, ARG327B, ARG722B, ARG80D, ARG928B, ARG947B, ASN1005B, ASN1034B, ASN22D, ASN41D, ASN810B, ASN885B, ASN904B, ASN907B, ASN908B, ASN950B, ASN952B, ASN970B, ASP116D, ASP137B, ASP184B, ASP361B, ASP925B, ASP948B, CYS215D, GLN183B, GLN30D, GLN31D, GLN845B, GLU1002B, GLU1079B, GLU117B, GLU138D, GLU146D, GLU147D, GLU18D, GLU215B, GLU217D, GLU219D, GLU25D, GLU787B, GLU811B, GLU839B, GLU840B, GLU842B, GLU969B, GLY119D, GLY125D, GLY129D, GLY187B, GLY20D, GLY34D, GLY357B, GLY380B, GLY39D, GLY46D, GLY868B, HIS163B, HIS789B, HIS905B, ILE165B, ILE359B, ILE43D, ILE909B, LEU115D, LEU117D, LEU122D, LEU132D, LEU162B, LEU16D, LEU21D, LEU328B, LEU38D, LEU814B, LEU912B, LEU926B, LEU931B, LEU992B, LYS1081B, LYS120D, LYS128D, LYS131D, LYS134D, LYS15D, LYS40D, LYS60B, LYS723B, LYS82D, LYS844B, LYS867B, MET835B, MET910B, MET927B, MET954B, PHE1003B, PHE170D, PHE27D, PHE382B, PHE949B, PHE972B, PRO115B, PRO123D, PRO148D, PRO185B, PRO358B, PRO44D, PRO45D, PRO721B, PRO838B, PRO843B, PRO951B, SER116B, SER118D, SER124D, SER126D, SER216D, SER29D, SER36D, SER379B, SER37D, SER720B, SER738B, SER773B, SER815B, SER872B, SER886B, SER929B, SER955B, THR1032B, THR1078B, THR113D, THR118B, THR121D, THR19D, THR214D, THR23D, THR28D, THR33D, THR35D, THR833B, THR887B, TRP953B, TYR127D, TYR175D, TYR26D, TYR812B, TYR837B, TYR871B, TYR906B, TYR913B, VAL1004B, VAL1006B, VAL1033B, VAL114D, VAL130D, VAL24D, VAL32D, VAL360B, VAL47D, VAL786B, VAL836B, VAL870B, VAL930B