2AKH

normal mode-based flexible fitted coordinates of a non- translocating secyeg protein-conducting channel into the cryo-em map of a secyeg-nascent chain-70s ribosome complex from e. coli

• Total interactions analyzed: 15
• Total true interactions: 8
• Strongest Interaction:
  • Chains: Y-B
  • Int. Res.: 20
  • Norm. En. per Res.: -0.2185
• Hub Node: Y(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
X-Y	0.0	0.0	-3.4194	-3.4194	69	0	0	685	0	0	0
X-C	0.0	0.0	-4.0198	-4.0198	49	0	0	894	0	0	0
Y-Z	0.0	0.0	-0.5748	-0.5748	49	0	0	310	0	0	0
Y-B	0.0	0.0	-4.3699	-4.3699	20	0	0	421	0	0	0
Y-C	0.0	0.0	-0.2689	-0.2689	12	0	0	97	0	0	0
Z-B	0.0	0.0	-0.0865	-0.0865	7	0	0	33	0	0	0
A-B	0.0	0.0	-2.686	-2.686	67	0	0	722	0	0	0
B-C	0.0	0.0	-1.0617	-1.0617	71	0	0	471	0	0	0

Interface residues

• X-Y: ALA12Y, ALA13X, ALA155Y, ALA29Y, ALA32X, ALA4X, ARG113Y, ARG114Y, ARG54X, ASN50X, ASP8Y, GLN10Y, GLN118Y, GLN177Y, GLN4Y, GLU110Y, GLU180Y, GLU3X, GLY14Y, GLY153Y, GLY15Y, GLY18X, GLY27X, GLY28Y, GLY31X, GLY36Y, GLY47X, GLY49X, GLY6Y, ILE11X, ILE14X, ILE35Y, ILE39Y, ILE66X, LEU10X, LEU16Y, LEU174Y, LEU22X, LEU58X, LEU59X, LEU62X, LEU6X, LEU70X, LYS115Y, LYS13Y, MET169Y, MET21X, MET30X, MET52X, MET55X, PHE154Y, PHE170Y, PHE51X, PHE63X, PHE9Y, PRO5Y, SER117Y, SER11Y, SER163Y, SER45X, SER46X, SER48X, THR159Y, THR166Y, THR53X, VAL162Y, VAL17X, VAL32Y, VAL7X
• X-C: ALA24C, ALA29C, ALA36X, ALA4X, ALA67C, ALA72C, ARG37C, ASN50X, ASP38C, GLN23X, GLN24X, GLU3X, GLY15X, GLY18X, GLY35X, GLY49X, GLY65C, ILE11X, ILE39C, LEU19X, LEU22X, LEU25C, LEU26C, LEU41C, LEU42X, LEU5X, LEU6X, LYS18C, LYS64C, LYS66C, MET21X, MET40C, MET52X, PHE51X, PRO42C, SER48X, THR41X, THR53X, THR62C, THR63C, THR68C, TRP19C, VAL12X, VAL20C, VAL21C, VAL22C, VAL23C, VAL7X, VAL8X
• Y-Z: ALA197Y, ALA75Z, ALA98Z, ARG117Z, ARG239Y, ARG242Y, ARG243Y, ARG34Y, ARG372Y, ARG87Z, ASP112Z, GLN241Y, GLN88Z, GLU78Z, GLU89Z, GLY110Z, GLY113Z, GLY198Y, GLY240Y, HIS205Y, ILE244Y, ILE27Y, ILE31Y, ILE35Y, ILE39Y, ILE413Y, LEU111Z, LEU115Z, LEU30Y, MET414Y, MET417Y, PHE232Y, PHE38Y, PRO200Y, PRO201Y, PRO85Z, SER120Z, THR101Z, THR86Z, TRP109Z, TYR380Y, VAL116Z, VAL119Z, VAL196Y, VAL235Y, VAL376Y, VAL79Z, VAL82Z, VAL97Z
• Y-B: ALA103B, ALA103Y, ALA2Y, GLU104B, GLU104Y, ILE105B, ILE326B, ILE92Y, LEU102B, LEU102Y, LEU94Y, LEU95Y, LYS106B, PHE327B, PRO100Y, THR101B, THR101Y, THR96Y, VAL97B, VAL98Y
• Y-C: ALA2Y, ALA55C, ALA59C, GLY56C, GLY6Y, LEU60C, LEU7Y, PRO5Y, THR62C, THR63C, VAL21C, VAL22C
• Z-B: ALA2B, ILE30Z, LEU26Z, LEU27Z, LYS3B, VAL23Z, VAL31Z
• A-B: ALA12B, ALA13A, ALA155B, ALA29B, ALA32A, ARG113B, ARG114B, ARG54A, ASN50A, ASN74A, ASP8B, GLN10B, GLN118B, GLN177B, GLN4B, GLU3A, GLY14B, GLY15B, GLY31A, GLY36B, GLY44A, GLY47A, GLY49A, GLY6B, ILE11A, ILE14A, ILE35B, ILE39B, ILE66A, ILE73A, ILE77B, LEU10A, LEU174B, LEU22A, LEU58A, LEU59A, LEU62A, LEU6A, LEU70A, LEU7B, LYS115B, MET169B, MET21A, MET30A, MET52A, MET55A, PHE156B, PHE170B, PHE51A, PHE63A, PHE9B, PRO5B, SER117B, SER11B, SER163B, SER46A, SER48A, THR159B, THR166B, THR53A, TRP173B, VAL162B, VAL165B, VAL17A, VAL32B, VAL69A, VAL7A
• B-C: ALA193B, ALA197B, ALA322B, ALA47C, ALA53C, ALA70C, ALA75C, ALA98C, ARG117C, ARG239B, ARG242B, ARG34B, ARG76C, ARG87C, ASP112C, GLN241B, GLN88C, GLU78C, GLU89C, GLY113C, GLY198B, GLY240B, GLY377B, GLY56C, GLY57C, ILE31B, ILE35B, ILE413B, ILE50C, LEU108C, LEU111C, LEU115C, LEU199B, LEU316B, LEU319B, LEU320B, LEU373B, LEU375B, LEU46C, MET104C, MET414B, MET417B, PHE232B, PHE236B, PHE38B, PHE71C, PRO200B, PRO201B, PRO315B, PRO85C, SER105C, SER120C, SER323B, SER37B, THR101C, THR374B, THR86C, THR94C, TRP109C, TYR380B, VAL116C, VAL119C, VAL196B, VAL235B, VAL376B, VAL410B, VAL49C, VAL69C, VAL79C, VAL82C, VAL97C