2A6H
crystal structure of the t. thermophilus rna polymerase holoenzyme in complex with antibiotic sterptolydigin
Total interactions analyzed 66
Total true interactions 21
Strongest Interaction Chains M-N
Int. Res. 689
Norm. En. per Res. -3.9323
Hub Node A(3)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -3.0371 2.166 -375.145 -376.0162 143 32 16 17111 0 26 34
A-C -78.8987 -189.6024 -460.518 -729.0191 196 59 7 20941 22 123 100
A-D 0.0 1.5073 -0.3321 1.1753 6 0 0 59 0 7 4
B-C -7.9242 -71.2048 -45.0166 -124.1455 34 4 0 1800 3 13 18
B-D -3.6675 -97.2409 -146.313 -247.2214 112 18 8 7788 5 53 42
B-E 0.0 0.0 -0.0272 -0.0272 2 0 0 11 0 0 0
C-D -322.4484 -269.7681 -2364.78 -2956.9966 756 254 78 104487 24 307 274
C-E 0.0 -26.3707 -21.243 -47.6137 27 2 0 854 0 11 6
C-F -4.2836 -23.4243 -229.392 -257.0999 162 20 9 12633 4 63 61
D-E -67.1208 -83.9418 -469.908 -620.9706 164 47 21 22509 7 72 57
D-F -135.9308 -225.3393 -666.54 -1027.8101 377 109 15 34665 16 211 157
K-L -11.6751 7.1788 -366.788 -371.2843 139 30 16 17021 0 26 31
K-M -50.0254 -123.5847 -389.417 -563.0271 196 42 7 19056 11 114 100
K-N 0.0 3.5827 -0.7355 2.8472 5 0 0 107 0 7 4
L-M 0.0 -42.97 -22.1548 -65.1248 28 3 0 1274 1 11 17
L-N -10.6651 -76.0154 -178.785 -265.4655 129 26 9 9395 6 55 44
M-N -348.8083 -287.3066 -2073.22 -2709.3349 689 218 67 90810 21 283 233
M-O 0.0 -21.4872 4 ARG32O, ASP1075M, GLU1074M, GLU61O
M-P -27.4908 56.3473 22 ARG276P, ARG376M, ARG772M, ARG775M, ASP335P, ASP423P, ASP714M, GLU285P, GLU305P, GLU336P, GLU379M, GLU764M, GLU770M, GLU771M, GLY1011M, HIS337P, HIS728M, ILE333P, LEU1015M, LYS373P, SER340P, TYR1013M
N-O -96.4837 -81.9047 37 ARG1213N, ARG18O, ARG26O, ARG72O, ARG760N, ASP1488N, ASP56O, ASP57O, ASP7O, GLN1485N, GLU1219N, GLU1497N, GLU3O, GLU61O, GLU663N, GLU67O, GLU693N, GLU88O, GLU925N, GLY76O, HIS640N, HIS767N, ILE1217N, LYS1490N, LYS16O, LYS660N, LYS698N, LYS8O, LYS926N, MET924N, PHE1480N, SER15O, THR50O, THR62O, VAL1487N, VAL74O, VAL80O
N-P -116.2119 -164.1501 82 ALA416N, ALA559N, ARG132P, ARG140P, ARG159N, ARG178P, ARG184P, ARG232P, ARG256P, ARG259P, ARG455N, ARG545N, ARG546N, ARG550N, ARG553N, ARG572N, ARG598N, ARG601N, ARG622N, ARG675N, ARG86N, ASN569N, ASN593N, ASP155N, ASP160P, ASP211P, ASP326P, ASP331P, ASP335P, ASP377P, ASP419N, ASP420P, ASP423N, ASP423P, ASP438N, ASP453N, ASP523N, ASP539N, ASP542N, ASP55N, ASP79P, GLN254P, GLN560N, GLN616N, GLU101P, GLU156N, GLU179P, GLU189P, GLU214N, GLU215P, GLU30N, GLU313P, GLU318P, GLU389N, GLU40N, GLU436N, GLU459N, GLU564N, GLU570N, GLU87P, GLU97P, GLU98P, GLY206P, HIS175P, HIS337P, HIS86P, LYS131N, LYS134P, LYS164P, LYS168P, LYS171P, LYS426N, LYS54N, LYS64N, LYS671N, LYS82N, PHE535N, SER208P, THR537N, TYR84P, VAL315P, VAL384N