2A6E
crystal structure of the t. thermophilus rna polymerase holoenzyme
Total interactions analyzed 66
Total true interactions 21
Strongest Interaction Chains B-C
Int. Res. 36
Norm. En. per Res. -4.0774
Hub Node A(3)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -21.6845 5.9756 -390.989 -406.6979 144 50 14 17677 0 27 34
A-C -81.8302 -138.9111 -423.862 -644.6034 195 51 8 20330 16 120 98
A-D 0.0 2.3948 -0.6117 1.7831 7 0 0 101 0 6 4
B-C -15.3556 -80.4728 -50.9587 -146.7871 36 4 0 1889 5 13 18
B-D -13.9613 -114.3445 -135.524 -263.8298 110 27 8 7650 7 53 40
B-E 0.0 0.0 -0.1497 -0.1497 4 0 0 31 0 0 0
C-D -321.8168 -240.8814 -2316.8 -2879.4982 758 250 80 102488 25 316 274
C-E 0.0 -33.8766 -16.3137 -50.1903 25 3 0 969 1 11 8
C-F -29.9838 -43.6733 -268.541 -342.1981 168 35 9 13761 6 64 62
D-E -69.7068 -75.8572 -514.499 -660.0629 172 53 22 23771 7 72 57
D-F -132.7378 -226.3767 -761.628 -1120.7426 375 108 13 35745 19 212 160
K-L -6.3839 1.1457 -373.596 -378.8342 141 34 16 16943 0 26 32
K-M -52.3471 -140.5607 -376.945 -569.8528 191 42 7 18792 10 114 100
K-N 0.0 2.6262 -0.383 2.2432 6 0 0 77 0 7 5
L-M -9.1513 -45.1564 -25.3652 -79.6729 27 3 0 1172 2 11 17
L-N -16.1998 -78.2946 -200.053 -294.5475 125 24 8 9659 10 57 43
M-N -368.453 -304.2507 -2121.73 -2794.4337 706 204 71 92709 30 281 239
M-O -5.8918 -29.7883 4 ARG32O, ASP1075M, GLU1074M, GLU61O
M-P -28.3185 46.6499 22 ARG276P, ARG376M, ARG772M, ARG775M, ASP335P, ASP423P, ASP714M, GLU285P, GLU305P, GLU336P, GLU379M, GLU764M, GLU770M, GLU771M, GLY818M, HIS337P, HIS728M, ILE333P, LEU1015M, LYS373P, LYS762M, TYR1013M
N-O -131.698 -78.9563 38 ARG1213N, ARG18O, ARG26O, ARG72O, ARG760N, ASP1488N, ASP56O, ASP57O, ASP7O, GLN1485N, GLU1219N, GLU1497N, GLU3O, GLU61O, GLU663N, GLU67O, GLU693N, GLU88O, GLU925N, GLY76O, HIS640N, HIS767N, ILE1217N, LYS1490N, LYS16O, LYS25O, LYS698N, LYS8O, LYS926N, MET924N, PHE1480N, SER15O, THR1484N, THR50O, THR62O, VAL1487N, VAL74O, VAL80O
N-P -99.7206 -200.3929 83 ALA416N, ARG132P, ARG140P, ARG159N, ARG178P, ARG184P, ARG232P, ARG256P, ARG259P, ARG455N, ARG545N, ARG546N, ARG550N, ARG553N, ARG572N, ARG587N, ARG598N, ARG601N, ARG622N, ARG675N, ARG86N, ASN569N, ASN593N, ASP155N, ASP160P, ASP211P, ASP331P, ASP377P, ASP419N, ASP420P, ASP423N, ASP423P, ASP438N, ASP453N, ASP523N, ASP539N, ASP542N, ASP55N, ASP79P, GLN254P, GLN560N, GLU101P, GLU156N, GLU179P, GLU189P, GLU214N, GLU215P, GLU30N, GLU313P, GLU318P, GLU324P, GLU389N, GLU40N, GLU436N, GLU459N, GLU564N, GLU570N, GLU87P, GLU97P, GLY206P, HIS175P, HIS337P, HIS86P, LEU317P, LYS131N, LYS134P, LYS164P, LYS168P, LYS171P, LYS426N, LYS54N, LYS610N, LYS62N, LYS64N, LYS671N, LYS74P, LYS82N, SER208P, SER316P, THR537N, TYR84P, VAL315P, VAL384N