2A69
crystal structure of the t. thermophilus rna polymerase holoenzyme in complex with antibiotic rifapentin
Total interactions analyzed 66
Total true interactions 21
Strongest Interaction Chains D-E
Int. Res. 171
Norm. En. per Res. -4.0595
Hub Node A(3)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -16.358 5.0191 -400.284 -411.6229 145 44 16 17839 0 26 34
A-C -69.4767 -148.5626 -396.522 -614.5613 197 48 8 20187 20 121 97
A-D 0.0 3.3275 -0.8666 2.4609 5 0 0 99 0 6 4
B-C -2.9671 -76.5412 -50.578 -130.0864 35 2 0 1793 3 13 17
B-D -7.0433 -115.3891 -142.274 -264.7064 113 25 8 7929 3 54 42
B-E 0.0 0.0 -0.047 -0.047 2 0 0 16 0 0 0
C-D -289.6528 -199.4705 -2239.88 -2729.0033 762 248 76 102445 28 314 273
C-E 0.0 -25.3732 -19.3323 -44.7055 25 5 0 916 2 11 7
C-F -15.4384 -33.5792 -246.204 -295.2216 164 25 8 12934 4 61 64
D-E -81.0266 -74.486 -538.662 -694.1747 171 47 22 23938 6 72 57
D-F -106.4934 -226.8995 -712.962 -1046.3549 373 102 15 35295 20 213 155
K-L -7.8922 9.0273 -369.168 -368.0328 140 28 14 16660 0 27 31
K-M -50.553 -147.0448 -357.918 -555.5158 197 43 7 18631 10 112 99
K-N 0.0 5.007 -2.0855 2.9215 7 0 0 182 0 7 4
L-M -6.7113 -48.9033 -25.0953 -80.7099 31 2 0 1322 1 11 17
L-N -25.8586 -81.6531 -168.955 -276.4668 125 17 8 9098 6 57 43
M-N -359.4019 -303.7926 -2162.81 -2826.0045 705 212 69 92925 26 284 242
M-O -7.9848 -23.0134 4 ARG32O, ASP1075M, GLU1074M, GLU61O
M-P -24.2563 19.1775 21 ARG276P, ARG376M, ARG772M, ARG775M, ASP335P, ASP423P, ASP714M, GLU285P, GLU305P, GLU336P, GLU379M, GLU764M, GLU770M, GLU771M, HIS337P, HIS728M, ILE333P, LEU1015M, LYS373P, LYS762M, TYR1013M
N-O -94.4808 -74.2606 35 ARG18O, ARG26O, ARG72O, ARG760N, ASP1488N, ASP56O, ASP57O, ASP7O, GLN1485N, GLU1219N, GLU1497N, GLU3O, GLU61O, GLU663N, GLU67O, GLU693N, GLU88O, GLU925N, GLY76O, HIS640N, HIS767N, ILE1217N, ILE6O, LYS1490N, LYS16O, LYS698N, LYS8O, LYS926N, PHE1480N, SER15O, THR50O, THR62O, VAL1487N, VAL74O, VAL80O
N-P -134.4361 -170.6645 92 ALA559N, ARG132P, ARG140P, ARG159N, ARG178P, ARG232P, ARG256P, ARG259P, ARG35N, ARG455N, ARG545N, ARG546N, ARG550N, ARG553N, ARG572N, ARG587N, ARG598N, ARG601N, ARG615N, ARG622N, ARG65N, ARG674N, ARG675N, ARG86N, ASN569N, ASN593N, ASP155N, ASP160P, ASP211P, ASP326P, ASP331P, ASP335P, ASP377P, ASP419N, ASP420P, ASP423N, ASP423P, ASP438N, ASP453N, ASP523N, ASP539N, ASP542N, ASP55N, ASP79P, GLN218P, GLN254P, GLN611N, GLU101P, GLU156N, GLU179P, GLU189P, GLU214N, GLU215P, GLU30N, GLU313P, GLU318P, GLU324P, GLU389N, GLU40N, GLU436N, GLU459N, GLU564N, GLU570N, GLU662N, GLU87P, GLU97P, GLY206P, GLY374P, HIS175P, HIS337P, HIS86P, LYS131N, LYS134P, LYS164P, LYS168P, LYS171P, LYS325P, LYS426N, LYS54N, LYS556N, LYS610N, LYS62N, LYS64N, LYS671N, LYS74P, LYS82N, PHE535N, THR537N, TYR215N, TYR84P, VAL315P, VAL384N