2A68
crystal structure of the t. thermophilus rna polymerase holoenzyme in complex with antibiotic rifabutin
Total interactions analyzed 66
Total true interactions 21
Strongest Interaction Chains M-N
Int. Res. 693
Norm. En. per Res. -3.887
Hub Node A(3)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -13.1898 -6.7605 -392.266 -412.2162 141 42 16 17476 0 26 34
A-C -60.5109 -145.6651 -436.069 -642.245 195 60 7 20279 13 123 101
A-D 0.0 2.6766 -0.7864 1.8902 7 0 0 111 0 6 4
B-C -10.5746 -61.2898 -43.8051 -115.6695 32 3 0 1831 2 14 18
B-D -21.9432 -97.7087 -135.256 -254.9079 113 23 8 7365 5 54 40
B-E 0.0 0.0 -0.0352 -0.0352 2 0 0 13 0 0 0
C-D -334.5462 -233.1996 -2371.32 -2939.0659 763 271 78 105339 23 314 276
C-E -7.5525 -34.8268 -23.9174 -66.2967 26 4 0 1005 1 11 7
C-F -11.3932 -23.4642 -262.344 -297.2014 167 21 8 13380 2 62 64
D-E -68.536 -60.4836 -502.184 -631.2036 171 48 22 23272 6 73 57
D-F -138.8759 -239.0098 -718.323 -1096.2087 375 96 16 34988 18 214 157
K-L -9.1852 2.4554 -368.977 -375.7068 136 41 16 17205 0 27 31
K-M -48.9614 -138.2962 -381.679 -568.9366 195 34 7 19098 14 115 98
K-N 0.0 2.7379 -0.5599 2.178 4 0 0 98 0 7 4
L-M 0.0 -50.8116 -22.5041 -73.3157 28 4 0 1328 2 11 15
L-N -33.8746 -120.6544 -214.119 -368.648 126 32 9 10311 9 58 46
M-N -323.9748 -286.4368 -2083.29 -2693.7016 693 196 68 89864 24 278 237
M-O -3.217 -22.2963 4 ARG32O, ASP1075M, GLU1074M, GLU61O
M-P -38.8556 32.0935 23 ARG276P, ARG376M, ARG772M, ARG775M, ASP335P, ASP423P, ASP714M, GLU1068M, GLU285P, GLU305P, GLU336P, GLU379M, GLU764M, GLU770M, GLU771M, HIS337P, HIS728M, ILE333P, LEU1015M, LYS373P, LYS762M, SER348P, TYR1013M
N-O -82.732 -76.1545 35 ARG1213N, ARG26O, ARG72O, ARG760N, ASP1488N, ASP56O, ASP57O, ASP7O, GLN1485N, GLN717N, GLU1219N, GLU1497N, GLU3O, GLU61O, GLU663N, GLU67O, GLU693N, GLU88O, GLU925N, GLY76O, HIS640N, HIS767N, ILE1217N, ILE6O, LYS1490N, LYS16O, LYS698N, LYS8O, LYS926N, SER15O, THR50O, THR62O, VAL1487N, VAL74O, VAL80O
N-P -124.3139 -170.7292 89 ALA416N, ARG132P, ARG140P, ARG159N, ARG178P, ARG184P, ARG232P, ARG256P, ARG259P, ARG41N, ARG455N, ARG545N, ARG546N, ARG550N, ARG553N, ARG572N, ARG587N, ARG598N, ARG601N, ARG615N, ARG622N, ARG675N, ARG86N, ASN569N, ASP155N, ASP160P, ASP211P, ASP253P, ASP326P, ASP331P, ASP335P, ASP377P, ASP419N, ASP420P, ASP423N, ASP423P, ASP438N, ASP453N, ASP523N, ASP539N, ASP542N, ASP55N, ASP79P, GLN214P, GLN254P, GLN560N, GLU101P, GLU156N, GLU179P, GLU189P, GLU214N, GLU215P, GLU30N, GLU313P, GLU318P, GLU324P, GLU389N, GLU40N, GLU436N, GLU459N, GLU564N, GLU570N, GLU87P, GLU97P, GLY532N, HIS175P, HIS337P, HIS86P, LEU317P, LYS131N, LYS134P, LYS164P, LYS168P, LYS171P, LYS309P, LYS426N, LYS54N, LYS610N, LYS62N, LYS64N, LYS671N, LYS74P, LYS82N, SER316P, THR257P, THR537N, TYR84P, VAL315P, VAL384N