1ZYR
structure of thermus thermophilus rna polymerase holoenzyme in complex with the antibiotic streptolydigin
Total interactions analyzed 66
Total true interactions 21
Strongest Interaction Chains D-E
Int. Res. 173
Norm. En. per Res. -4.0056
Hub Node A(3)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -27.6247 10.4998 -368.557 -385.6819 138 49 16 17191 1 24 31
A-C -91.838 -154.5902 -473.101 -719.5292 208 76 6 21878 18 126 106
A-D 0.0 5.0905 -1.5487 3.5418 4 0 0 171 0 7 4
B-C -5.265 -47.0923 -39.4187 -91.776 38 2 0 1917 2 14 19
B-D -17.3526 -65.8524 -140.649 -223.854 120 18 8 8476 9 55 47
B-E 0.0 0.0 -0.2288 -0.2288 3 0 0 39 0 0 0
C-D -283.4707 -238.7186 -2274.94 -2797.1293 752 267 83 101639 28 313 263
C-E 0.0 -27.0521 -13.6489 -40.701 21 2 0 819 0 12 9
C-F -22.4667 2.3866 -257.388 -277.4681 175 18 11 14783 2 70 75
D-E -109.7635 -90.4331 -492.775 -692.9716 173 55 21 23871 5 75 57
D-F -144.6907 -233.5088 -840.726 -1218.9255 398 119 20 40233 20 226 170
K-L -32.9073 7.5822 -326.525 -351.8501 142 47 15 17097 1 29 32
K-M -37.6246 -126.9015 -380.459 -544.985 187 58 8 18553 12 115 95
K-N 0.0 6.3794 -4.0145 2.3648 6 1 0 253 0 6 4
L-M -17.5755 -43.4509 -21.6342 -82.6606 36 4 0 1579 5 16 19
L-N -48.1576 -50.0589 -189.441 -287.6575 126 29 9 9868 7 58 47
M-N -230.3681 -251.3154 -1924.45 -2406.1335 682 237 65 87692 20 266 243
M-O -2.5676 -11.4339 4 ARG32O, ASP1075M, GLU1074M, GLU61O
M-P -4.2127 -38.8369 17 ARG376M, ARG772M, ARG775M, ASP377P, ASP423P, ASP714M, GLU285P, GLU305P, GLU336P, GLU379M, GLU764M, GLU771M, GLU780M, HIS337P, HIS728M, LYS309P, LYS373P
N-O -134.8228 -34.6347 42 ARG1213N, ARG1499N, ARG18O, ARG26O, ARG72O, ARG760N, ARG84O, ASN59O, ASP1479N, ASP1488N, ASP56O, ASP57O, ASP7O, GLN1485N, GLN717N, GLU1219N, GLU1497N, GLU3O, GLU61O, GLU663N, GLU67O, GLU693N, GLU77O, GLU88O, GLU925N, GLY76O, HIS640N, HIS767N, LYS1490N, LYS16O, LYS25O, LYS659N, LYS660N, LYS698N, LYS8O, LYS926N, MET924N, PHE1480N, THR1484N, THR38O, VAL1487N, VAL74O
N-P -166.8459 -38.6921 91 ALA133P, ARG140P, ARG159N, ARG178P, ARG184P, ARG232P, ARG259P, ARG41N, ARG455N, ARG546N, ARG550N, ARG553N, ARG568N, ARG572N, ARG598N, ARG601N, ARG613N, ARG615N, ARG675N, ARG82P, ARG86N, ASN593N, ASP155N, ASP211P, ASP253P, ASP326P, ASP335P, ASP377P, ASP419N, ASP420P, ASP423N, ASP438N, ASP451N, ASP453N, ASP523N, ASP539N, ASP542N, ASP55N, ASP605N, ASP79P, GLN214P, GLN560N, GLN83P, GLN90P, GLU101P, GLU156N, GLU167N, GLU179P, GLU189P, GLU214N, GLU215P, GLU30N, GLU313P, GLU318P, GLU374N, GLU375N, GLU382N, GLU389N, GLU40N, GLU436N, GLU459N, GLU564N, GLU570N, GLU87P, GLU97P, GLU98P, GLY137P, GLY206P, HIS175P, HIS337P, HIS386N, HIS388N, HIS86P, LEU317P, LYS131N, LYS134P, LYS171P, LYS28N, LYS325P, LYS426N, LYS428N, LYS54N, LYS64N, LYS671N, LYS82N, PHE535N, SER138P, SER316P, THR537N, VAL315P, VAL384N