1ZY1

x-ray structure of peptide deformylase from arabidopsis thaliana (atpdf1a) in complex with met-ala-ser

• Total interactions analyzed: 6
• Total true interactions: 3
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 104
  • Norm. En. per Res.: -3.4582
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-84.1576	17.5027	-292.994	-359.6489	104	22	5	11645	0	32	31
A-D	-55.0827	0.0	-93.5659	-148.6486	52	23	1	4085	0	0	0
B-E	-30.3864	0.0	-96.7233	-127.1097	52	13	1	3907	0	0	0

Interface residues

• A-B: ALA119A, ALA119B, ALA183A, ALA183B, ALA8A, ALA8B, ARG118A, ARG118B, ARG170A, ARG170B, ARG173A, ARG173B, ASN161A, ASN161B, ASN177A, ASN177B, ASP115A, ASP115B, ASP11A, ASP11B, ASP156A, ASP156B, ASP159A, ASP159B, ASP165A, ASP165B, ASP176A, ASP176B, ASP179A, ASP179B, CYS111A, CYS111B, CYS186A, CYS186B, GLU16A, GLU16B, GLU184A, GLU184B, GLY10A, GLY10B, GLY116A, GLY116B, GLY160A, GLY160B, GLY185A, GLY185B, HIS157A, HIS15A, HIS15B, ILE6A, ILE6B, LEU112A, LEU112B, LEU14A, LEU14B, LEU158A, LEU162A, LEU162B, LEU178A, LEU178B, LEU180A, LEU180B, LEU182A, LEU182B, LYS166A, LYS166B, LYS17A, LYS17B, MET167A, MET167B, PHE108A, PHE108B, PHE117A, PHE117B, PHE172A, PHE172B, PRO12A, PRO12B, PRO169A, PRO169B, PRO181A, PRO181B, SER113A, SER113B, SER9A, SER9B, THR171A, THR171B, THR174A, THR174B, TYR163A, TYR163B, VAL114A, VAL114B, VAL13A, VAL13B, VAL164A, VAL164B, VAL168A, VAL168B, VAL175A, VAL175B, VAL7A, VAL7B
• A-D: ALA148A, ALA2D, ALA45A, ALA51A, ALA74A, ARG118A, ARG123A, ARG149A, ARG43A, ARG84A, ASP115A, ASP156A, ASP66A, CYS111A, GLN147A, GLN152A, GLN54A, GLU109A, GLU154A, GLU65A, GLY110A, GLY116A, GLY47A, GLY49A, HIS153A, HIS157A, ILE150A, ILE62A, ILE71A, LEU112A, LEU151A, LEU50A, LEU64A, MET1D, MET42A, PHE107A, PHE108A, PHE117A, PHE87A, PRO46A, SER113A, SER3D, THR67A, TRP146A, TYR163A, TYR70A, TYR73A, VAL114A, VAL121A, VAL175A, VAL48A, VAL63A
• B-E: ALA148B, ALA2E, ALA45B, ALA51B, ALA74B, ARG118B, ARG123B, ARG149B, ARG84B, ASP115B, ASP66B, CYS111B, GLN147B, GLN152B, GLN54B, GLN82B, GLU109B, GLU154B, GLU65B, GLU69B, GLY110B, GLY116B, GLY145B, GLY47B, GLY49B, HIS153B, HIS157B, ILE150B, ILE71B, LEU112B, LEU151B, LEU50B, LEU64B, MET1E, MET42B, PHE107B, PHE108B, PHE117B, PHE87B, PRO46B, SER113B, SER3E, THR67B, TRP146B, TYR163B, TYR70B, TYR73B, VAL114B, VAL121B, VAL175B, VAL48B, VAL63B