1ZSE

rna stemloop from bacteriophage qbeta complexed with an n87s mutant ms2 capsid

• Total interactions analyzed: 6
• Total true interactions: 3
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 199
  • Norm. En. per Res.: -5.5738
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-186.264	-50.199	-872.721	-1109.184	199	39	44	36729	3	29	28
A-C	-15.3237	19.0388	-121.411	-117.6959	65	2	2	4713	0	4	5
B-C	0.0	0.0	-0.3329	-0.3329	5	0	0	40	0	0	0

Interface residues

• A-B: ALA107A, ALA107B, ALA121A, ALA121B, ALA123A, ALA123B, ALA124A, ALA124B, ALA1A, ALA1B, ALA21A, ALA21B, ALA30A, ALA30B, ALA68B, ALA80B, ALA81A, ALA81B, ALA96A, ALA96B, ARG56A, ARG56B, ARG83A, ARG83B, ASN116A, ASN116B, ASN125A, ASN125B, ASN12A, ASN12B, ASN24A, ASN24B, ASN3A, ASN3B, ASN55A, ASN55B, ASN98A, ASN98B, ASP100A, ASP100B, ASP114A, ASP114B, ASP11A, ASP11B, ASP17A, ASP17B, CYS101A, CYS101B, CYS46A, CYS46B, GLN109A, GLN109B, GLN54A, GLN54B, GLN6A, GLN6B, GLN70B, GLU102A, GLU102B, GLU31A, GLU31B, GLU63A, GLU63B, GLU89A, GLU89B, GLY110A, GLY110B, GLY115A, GLY115B, GLY127A, GLY127B, GLY13A, GLY13B, GLY16A, GLY16B, GLY28A, GLY28B, ILE104A, ILE104B, ILE118A, ILE118B, ILE122A, ILE122B, ILE128A, ILE128B, ILE60A, ILE60B, ILE92A, ILE92B, ILE94A, ILE94B, LEU103A, LEU103B, LEU111A, LEU111B, LEU112A, LEU112B, LEU86A, LEU86B, LEU90A, LEU90B, LEU9A, LEU9B, LYS106A, LYS106B, LYS113A, LYS113B, LYS43A, LYS43B, LYS57A, LYS57B, LYS61A, LYS61B, LYS66A, LYS66B, MET108A, MET108B, MET88A, MET88B, PHE25A, PHE25B, PHE4A, PHE4B, PHE7A, PHE7B, PHE95A, PHE95B, PRO117A, PRO117B, PRO119A, PRO119B, PRO22A, PRO22B, PRO65A, PRO65B, PRO78B, PRO93A, PRO93B, SER120A, SER120B, SER126A, SER126B, SER2A, SER2B, SER47A, SER47B, SER52A, SER84A, SER84B, SER87A, SER87B, SER99A, SER99B, THR45A, THR45B, THR59A, THR59B, THR5A, THR5B, THR69B, THR91A, THR91B, THR97A, THR97B, TRP32A, TRP32B, TRP82A, TRP82B, TYR129A, TYR129B, TYR42A, TYR42B, TYR58A, TYR58B, TYR85A, TYR85B, VAL105A, VAL105B, VAL10A, VAL10B, VAL18A, VAL18B, VAL20A, VAL20B, VAL29A, VAL29B, VAL44A, VAL44B, VAL48A, VAL48B, VAL62A, VAL62B, VAL64A, VAL64B, VAL67A, VAL67B, VAL79B, VAL8A, VAL8B
• A-C: ALA1A, ALA1C, ALA21A, ALA26A, ALA26C, ALA30C, ALA41A, ALA53C, ALA80A, ALA96C, ARG38A, ARG49C, ARG56C, ARG83A, ASN24A, ASN27A, ASN27C, ASN36A, ASN3A, ASN3C, ASN55C, ASN98C, ASP100C, CYS101C, CYS46C, GLN40A, GLN50C, GLN54C, GLN6A, GLN70A, GLU31A, GLU76A, GLY28A, GLY28C, ILE33A, ILE92C, ILE94C, LEU77A, LYS43A, PHE25A, PHE25C, PHE4A, PHE4C, PHE95C, PRO22A, PRO78A, PRO93C, SER23A, SER2A, SER2C, SER34A, SER35A, SER37A, SER39A, SER47C, SER99C, THR5A, THR97C, TRP32A, TYR58C, VAL29A, VAL29C, VAL48C, VAL72A, VAL79A
• B-C: ALA1C, ILE128B, PRO117B, SER2C, TYR129B