1ZRF

4 crystal structures of cap-dna with all base-pair substitutions at position 6, cap-[6c;17g]icap38 dna

• Total interactions analyzed: 15
• Total true interactions: 1
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 139
  • Norm. En. per Res.: -3.2017
• Hub Node: A(1)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-9.7746	-75.7291	-359.534	-445.0377	139	15	18	16138	4	31	23

Interface residues

• A-B: ALA118A, ALA118B, ALA121A, ALA121B, ALA135A, ALA135B, ALA36A, ALA36B, ALA84A, ALA84B, ARG103A, ARG103B, ARG115A, ARG115B, ARG122A, ARG122B, ARG123A, ARG123B, ARG142A, ARG142B, ARG82A, ARG82B, ASN109A, ASN109B, ASN133A, ASN133B, ASP111A, ASP111B, ASP53A, ASP53B, CYS178A, CYS178B, GLN107A, GLN107B, GLN119A, GLN119B, GLN125A, GLN125B, GLN174A, GLN174B, GLN32A, GLN32B, GLN80A, GLN80B, GLU129A, GLU129B, GLU54A, GLU54B, GLU55A, GLU55B, GLU58A, GLU58B, GLU72A, GLU72B, GLU77A, GLU77B, GLU78A, GLU78B, GLU81A, GLU81B, GLY132A, GLY132B, GLY173A, GLY173B, GLY177A, GLY177B, GLY56A, GLY56B, GLY74A, GLY74B, ILE106A, ILE106B, ILE112A, ILE112B, ILE175A, ILE175B, ILE51A, ILE51B, ILE60A, ILE60B, LEU113A, LEU113B, LEU116A, LEU116B, LEU124A, LEU124B, LEU134A, LEU134B, LEU137A, LEU137B, LEU50A, LEU50B, LEU61A, LEU61B, LEU64A, LEU64B, LEU73A, LEU73B, LEU75A, LEU75B, LYS130A, LYS130B, LYS52A, LYS52B, LYS57A, LYS57B, MET114A, MET114B, MET120A, MET120B, MET59A, MET59B, PHE102A, PHE102B, PHE136A, PHE136B, PHE76A, PHE76B, PRO110A, PRO110B, SER117A, SER117B, SER128A, SER128B, SER62A, SER62B, SER83A, SER83B, THR127A, THR127B, TYR99A, VAL126A, VAL126B, VAL131A, VAL131B, VAL176A, VAL176B, VAL49A, VAL49B