1ZNV

how a his-metal finger endonuclease cole7 binds and cleaves dna with a transition metal ion cofactor

• Total interactions analyzed: 6
• Total true interactions: 6
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 73
  • Norm. En. per Res.: -5.9091
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-94.3707	-110.4926	-226.504	-431.3673	73	13	1	8201	6	52	16
A-C	-22.3599	-25.7777	-90.3608	-138.4984	42	2	2	4207	4	18	24
A-D	-18.3314	-1.6082	-51.1814	-71.121	43	2	2	2749	2	38	32
B-C	-22.8461	-1.4939	-47.1183	-71.4583	42	2	2	2758	2	38	34
B-D	0.0	32.5284	-1.2198	31.3085	10	9	0	349	0	2	2
C-D	-94.4052	-123.4639	-228.633	-446.5022	77	13	1	8231	8	52	16

Interface residues

• A-B: ALA28A, ALA29A, ALA526B, ARG496B, ARG515B, ARG520B, ARG530B, ARG538B, ARG61A, ASN26A, ASN516B, ASN517B, ASN518B, ASP31A, ASP32A, ASP35A, ASP49A, ASP519B, ASP52A, ASP533B, ASP59A, ASP62A, ASP63A, GLN512B, GLN532B, GLU23A, GLU25A, GLU39A, GLU66A, GLY50A, GLY524B, GLY67A, HIS47A, ILE22A, ILE54A, ILE68A, LEU19A, LEU34A, LEU38A, LEU465B, LEU53A, LYS20A, LYS24A, LYS497B, LYS522B, LYS525B, LYS528B, LYS537B, MET521B, PHE513B, PHE541B, PRO48A, PRO527B, PRO57A, PRO65A, SER514B, SER540B, SER58A, SER64A, THR30A, THR51A, THR529B, THR531B, THR539B, THR565B, TYR55A, TYR56A, VAL27A, VAL33A, VAL36A, VAL42A, VAL523B, VAL534B
• A-C: ALA13A, ALA13C, ALA28A, ALA28C, ALA29A, ALA29C, ASN26A, ASN26C, GLN17A, GLN17C, GLU14A, GLU14C, GLU21A, GLU21C, GLU23A, GLU23C, GLU25A, GLU25C, GLU66A, GLU66C, ILE22A, ILE22C, LEU18A, LEU18C, LEU19A, LEU19C, LYS20A, LYS20C, LYS24A, LYS24C, MET1A, MET1C, PHE15A, PHE15C, PRO65A, PRO65C, THR30A, THR30C, VAL16A, VAL16C, VAL27A, VAL27C
• A-D: ALA13A, ARG515D, ARG520D, ASN516D, ASN517D, ASN518D, ASP494D, ASP519D, ASP62A, ASP63A, GLN17A, GLN86A, GLU12A, GLU14A, GLU23A, GLU501D, GLU66A, GLY524D, GLY67A, GLY87A, ILE68A, LEU19A, LYS20A, LYS490D, LYS498D, LYS505D, LYS511D, LYS522D, LYS525D, LYS70A, LYS73A, MET521D, PHE15A, PHE84A, PRO507D, PRO65A, SER504D, SER510D, SER64A, THR11A, VAL16A, VAL523D, VAL69A
• B-C: ALA13C, ARG515B, ARG520B, ASN516B, ASN517B, ASN518B, ASP494B, ASP519B, ASP62C, ASP63C, GLN17C, GLN86C, GLU12C, GLU14C, GLU23C, GLU501B, GLU66C, GLY524B, GLY67C, GLY87C, LEU19C, LYS20C, LYS497B, LYS498B, LYS505B, LYS511B, LYS522B, LYS525B, LYS70C, LYS73C, MET521B, PHE15C, PHE84C, PRO507B, PRO65C, SER504B, SER510B, SER64C, THR11C, VAL16C, VAL523B, VAL69C
• B-D: ARG515B, ARG515D, ASN516B, ASN516D, ASN518B, ASN518D, ASP519B, ASP519D, SER514B, SER514D
• C-D: ALA28C, ALA29C, ALA468D, ALA526D, ARG496D, ARG515D, ARG520D, ARG530D, ARG538D, ARG61C, ASN26C, ASN466D, ASN516D, ASN517D, ASN518D, ASP31C, ASP32C, ASP35C, ASP49C, ASP519D, ASP52C, ASP533D, ASP59C, ASP62C, ASP63C, GLN512D, GLN532D, GLU21C, GLU23C, GLU25C, GLU39C, GLU66C, GLY50C, GLY524D, GLY67C, HIS47C, ILE22C, ILE54C, ILE68C, LEU19C, LEU34C, LEU38C, LEU465D, LEU53C, LYS20C, LYS24C, LYS463D, LYS497D, LYS522D, LYS525D, LYS528D, LYS537D, MET521D, PHE513D, PHE541D, PRO48C, PRO527D, PRO57C, PRO65C, SER514D, SER540D, SER58C, SER64C, THR30C, THR51C, THR529D, THR531D, THR539D, THR565D, TYR55C, TYR56C, VAL27C, VAL33C, VAL36C, VAL42C, VAL523D, VAL534D