1Z6T

structure of the apoptotic protease-activating factor 1 bound to adp

• Total interactions analyzed: 6
• Total true interactions: 5
• Strongest Interaction:
  • Chains: B-D
  • Int. Res.: 87
  • Norm. En. per Res.: -2.3196
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-44.4484	-33.73	-141.243	-219.4214	101	16	0	6295	4	78	57
A-D	0.0	5.5091	-54.5703	-49.0612	47	0	0	2390	0	17	14
B-C	0.0	-3.1391	-71.696	-74.8351	51	2	0	3013	0	11	13
B-D	-19.4427	-35.2316	-147.133	-201.8073	87	8	0	6256	0	35	32
C-D	-31.2661	-29.9056	-79.2581	-140.4298	93	3	0	4418	0	70	54

Interface residues

• A-B: ALA304A, ALA310A, ALA363A, ALA54B, ARG466B, ASN347A, ASN45B, ASP19B, ASP266A, ASP271A, ASP305A, ASP360A, ASP405B, ASP476B, CYS401B, GLN214B, GLN309A, GLN346A, GLN463B, GLN465B, GLN469B, GLN477B, GLN49B, GLN50B, GLN51B, GLN558B, GLN586B, GLU14B, GLU17B, GLU283A, GLU289A, GLU293A, GLU308A, GLU316A, GLU362A, GLU407B, GLU409B, GLU410B, GLU412B, GLU46B, GLU515B, GLY154A, GLY319A, HIS153A, HIS311A, HIS468B, HIS471B, ILE313A, ILE314A, ILE402B, LEU292A, LEU306A, LEU342A, LEU473B, LEU516B, LYS130A, LYS131A, LYS189A, LYS18B, LYS21B, LYS267A, LYS288A, LYS290A, LYS302A, LYS303A, LYS315A, LYS318A, LYS348A, LYS355A, LYS398B, LYS431B, LYS511B, MET155A, MET406B, MET55B, PHE464B, PHE560B, PRO281A, PRO307A, PRO470B, PRO475B, PRO47B, SER268A, SER284A, SER285A, SER312A, SER356A, SER357A, SER358A, SER474B, THR397B, THR408B, THR472B, THR48B, TRP404B, TYR359A, TYR361A, TYR467B, VAL279A, VAL282A, VAL411B
• A-D: ARG111A, ASN134A, ASN73A, ASP170A, ASP225D, ASP255D, ASP271D, ASP66A, GLU175A, GLU221D, GLY105A, GLY148D, GLY176A, GLY275D, HIS171A, ILE106A, LEU143D, LEU173A, LYS130A, LYS139D, LYS142D, LYS144A, LYS192D, LYS224D, LYS252D, LYS277D, MET274D, PRO147D, PRO276D, PRO92A, SER108A, SER172A, SER248D, SER268D, SER272D, THR107A, THR270D, TRP149D, TRP249D, TYR109A, TYR278D, VAL110A, VAL273D, VAL279D, VAL69A, VAL93A, VAL94A
• B-C: ARG228C, ASP101B, ASP255C, ASP271C, GLN138B, GLN257C, GLU146C, GLU175B, GLU221C, GLY105B, GLY148C, GLY176B, GLY275C, GLY99B, HIS171B, HIS88B, ILE106B, ILE91B, LEU143C, LEU232C, LYS139C, LYS142C, LYS144C, LYS224C, LYS252C, LYS277C, MET274C, PRO147C, PRO276C, PRO92B, SER102B, SER104B, SER108B, SER172B, SER248C, SER256C, SER272C, SER95B, SER96B, SER97B, SER98B, THR107B, TRP149C, TYR109B, TYR278C, VAL103B, VAL110B, VAL273C, VAL279C, VAL93B, VAL94B
• B-D: ALA3B, ALA580D, ALA584D, ALA5B, ALA84B, ALA85B, ARG215D, ARG226D, ARG228D, ARG233B, ARG233D, ARG237B, ARG557D, ARG6B, ASN551D, ASN562D, ASN7B, ASP207D, ASP209B, ASP209D, ASP225D, ASP2B, ASP82B, ASP89B, CYS569D, CYS8B, GLN11B, GLN208D, GLN214D, GLN558D, GLN565D, GLN583D, GLU116B, GLU175B, GLU210D, GLU570D, GLU572D, GLY180B, GLY181B, GLY567D, GLY90B, HIS12B, HIS235B, HIS553D, HIS88B, ILE229D, ILE563D, ILE91B, LEU10B, LEU230B, LEU230D, LEU232B, LEU550D, LEU554D, LEU566D, LEU568D, LEU76B, LEU86B, LYS234B, LYS234D, LYS4B, LYS581D, LYS585D, LYS81B, MET231B, PHE178B, PHE212B, PHE212D, PHE560D, PRO179B, PRO236B, PRO559D, PRO561D, PRO571D, SER108B, SER211B, SER211D, SER213D, SER238B, SER574D, THR112B, THR573D, TYR109B, TYR577D, TYR72B, VAL564D, VAL93B
• C-D: ALA156C, ALA304C, ALA310C, ALA54D, ARG129C, ARG265C, ARG466D, ARG52D, ASP19D, ASP266C, ASP271C, ASP305C, ASP360C, ASP405D, ASP476D, CYS401D, GLN214D, GLN465D, GLN469D, GLN477D, GLN49D, GLN50D, GLN51D, GLN558D, GLU14D, GLU17D, GLU283C, GLU289C, GLU293C, GLU308C, GLU362C, GLU407D, GLU409D, GLU410D, GLU46D, GLU478D, GLU515D, GLY154C, GLY287C, GLY291C, HIS153C, HIS311C, HIS468D, HIS471D, ILE314C, LEU132C, LEU286C, LEU292C, LEU306C, LEU473D, LEU516D, LYS130C, LYS131C, LYS18D, LYS267C, LYS277C, LYS288C, LYS290C, LYS302C, LYS303C, LYS315C, LYS318C, LYS355C, LYS398D, LYS431D, LYS511D, MET155C, MET274C, MET406D, PHE560D, PRO281C, PRO307C, PRO475D, PRO47D, PRO559D, SER268C, SER284C, SER285C, SER356C, SER357C, SER358C, SER474D, THR128C, THR408D, THR472D, THR48D, TRP404D, TYR359C, TYR467D, VAL133C, VAL279C, VAL280C, VAL282C