1YNF

crystal structure of n-succinylarginine dihydrolase, astb, bound to substrate and product, an enzyme from the arginine catabolic pathway of escherichia coli

• Total interactions analyzed: 15
• Total true interactions: 7
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 45
  • Norm. En. per Res.: -2.7202
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-15.6141	-5.4178	-101.376	-122.4079	45	10	0	3877	0	29	23
A-C	0.0	3.3594	-1.0713	2.2881	8	0	0	118	0	2	2
A-F	-17.2101	-12.1552	-233.855	-263.2203	109	9	7	10239	0	24	14
B-C	-24.2486	-2.583	-78.9844	-105.816	63	5	2	4420	1	29	29
B-D	-31.3254	-11.166	-220.963	-263.4543	107	8	7	10161	0	24	14
C-E	-22.7947	-10.9108	-223.516	-257.2215	107	9	7	10300	0	24	13
C-F	0.0	-8.8361	-28.6885	-37.5246	34	1	1	1667	0	13	8

Interface residues

• A-B: ALA329B, ALA358B, ALA408B, ALA409B, ALA423A, ARG32B, ARG354B, ARG39A, ARG400A, ARG403A, ARG405A, ARG405B, ARG418A, ARG421A, ARG91A, ASP396A, ASP399A, ASP404A, ASP425A, GLN323B, GLN34B, GLN415A, GLN429A, GLU327B, GLU419A, GLU422A, GLU83A, GLY420A, HIS31B, LEU14A, LEU416A, LEU417A, LEU427A, PHE33B, PRO38A, PRO414A, SER36B, THR407B, TRP397A, TYR18B, TYR401A, TYR402A, VAL35B, VAL398A, VAL426A
• A-C: ALA340C, ALA341C, ARG91A, ASP342C, GLN84A, GLN92A, GLU87A, LYS88A
• A-F: ALA164A, ALA164F, ALA169A, ALA169F, ALA217A, ALA217F, ALA220A, ALA220F, ALA222A, ALA222F, ALA93A, ALA93F, ARG138A, ARG138F, ARG198A, ARG198F, ARG215A, ARG215F, ARG223A, ARG223F, ARG74A, ARG74F, ASN131A, ASN131F, ASN133A, ASN133F, ASN134A, ASN134F, ASN225A, ASN225F, GLN167A, GLN167F, GLN226A, GLN226F, GLN75A, GLN75F, GLN92A, GLN92F, GLU200A, GLU200F, GLU216A, GLU216F, GLU219A, GLU219F, GLY77A, GLY77F, GLY80F, HIS137A, HIS137F, HIS162A, HIS162F, HIS95A, HIS95F, LEU121F, LEU132A, LEU132F, LEU140A, LEU140F, LEU165A, LEU165F, LEU170A, LEU170F, LEU171A, LEU171F, LEU224A, LEU224F, LEU73A, LEU73F, LEU76A, LEU76F, LYS135A, LYS135F, LYS88A, LYS88F, PHE136A, PHE136F, PHE69A, PHE78A, PHE78F, PRO166A, PRO166F, PRO229A, PRO229F, PRO71A, PRO71F, SER139A, SER139F, SER163A, SER163F, SER79A, SER79F, SER99A, SER99F, THR128A, THR128F, THR214A, THR214F, TRP96A, TRP96F, VAL100A, VAL168A, VAL168F, VAL221A, VAL221F, VAL72A, VAL72F, VAL85A, VAL89A, VAL89F
• B-C: ALA329B, ALA340B, ALA340C, ALA341B, ALA51C, ALA53C, ALA55B, ALA55C, ARG312B, ARG312C, ARG326B, ARG326C, ASN336B, ASN336C, ASN392C, ASN395C, ASP313B, ASP314B, ASP314C, ASP342B, ASP352B, ASP388C, ASP54C, GLN293B, GLN323B, GLN323C, GLU337B, GLU347B, GLU347C, GLY330B, GLY333B, GLY56B, GLY56C, ILE345B, ILE345C, LEU319C, LEU321C, LEU335B, LEU335C, LEU338B, LEU339B, LEU339C, LEU348B, LEU348C, LEU47C, LEU52C, LYS349B, LYS349C, LYS50C, PHE351C, PHE391C, PHE57B, PHE57C, PRO344B, SER316B, SER316C, SER346B, SER346C, TRP332B, TRP332C, TYR334B, VAL350B, VAL350C
• B-D: ALA164B, ALA164D, ALA169B, ALA169D, ALA217B, ALA217D, ALA220B, ALA220D, ALA222B, ALA222D, ALA93B, ALA93D, ARG138B, ARG138D, ARG198B, ARG215B, ARG215D, ARG223B, ARG223D, ARG74B, ARG74D, ASN131B, ASN131D, ASN133B, ASN133D, ASN134B, ASN134D, ASN225B, ASN225D, GLN167B, GLN167D, GLN226B, GLN226D, GLN75B, GLN75D, GLN92B, GLN92D, GLU200B, GLU200D, GLU216B, GLU216D, GLU219B, GLU219D, GLY77B, GLY77D, HIS137B, HIS137D, HIS162B, HIS162D, HIS95B, HIS95D, LEU121B, LEU121D, LEU132B, LEU132D, LEU140B, LEU140D, LEU165B, LEU165D, LEU170B, LEU170D, LEU171B, LEU171D, LEU224B, LEU224D, LEU73B, LEU73D, LEU76B, LEU76D, LYS135B, LYS135D, LYS88B, LYS88D, PHE136B, PHE136D, PHE78B, PHE78D, PRO166B, PRO166D, PRO229B, PRO229D, PRO71B, PRO71D, SER139B, SER139D, SER163B, SER163D, SER79B, SER79D, SER99B, SER99D, THR128B, THR128D, THR214B, THR214D, TRP96B, TRP96D, VAL100B, VAL100D, VAL168B, VAL168D, VAL221B, VAL221D, VAL72B, VAL72D, VAL89B, VAL89D
• C-E: ALA164C, ALA164E, ALA169C, ALA169E, ALA217C, ALA217E, ALA220C, ALA220E, ALA222C, ALA222E, ALA93C, ALA93E, ARG138C, ARG138E, ARG198C, ARG198E, ARG215C, ARG215E, ARG223C, ARG223E, ARG74C, ARG74E, ASN131C, ASN131E, ASN133C, ASN133E, ASN134C, ASN134E, ASN225C, ASN225E, GLN167C, GLN167E, GLN226C, GLN226E, GLN75C, GLN75E, GLN92C, GLN92E, GLU200C, GLU200E, GLU216C, GLU216E, GLU219C, GLU219E, GLY77C, GLY77E, HIS137C, HIS137E, HIS162C, HIS162E, HIS95C, HIS95E, LEU132C, LEU132E, LEU140C, LEU140E, LEU165C, LEU165E, LEU170C, LEU170E, LEU171C, LEU171E, LEU224C, LEU224E, LEU73C, LEU73E, LEU76C, LEU76E, LYS135C, LYS135E, LYS88C, LYS88E, PHE136C, PHE136E, PHE78C, PHE78E, PRO166C, PRO166E, PRO210C, PRO229C, PRO229E, PRO71C, PRO71E, SER139C, SER139E, SER163C, SER163E, SER79C, SER79E, SER99C, SER99E, THR128C, THR128E, THR214C, THR214E, TRP96C, TRP96E, VAL100C, VAL100E, VAL168C, VAL168E, VAL221C, VAL221E, VAL72C, VAL72E, VAL89C, VAL89E
• C-F: ALA118F, ALA275C, ALA279C, ALA286C, ARG278C, ARG280C, ASN228F, ASN276C, ASN282C, ASP119F, ASP122F, GLN226F, GLN231F, GLN272C, GLU156F, GLU157F, GLU188F, GLU375F, GLU376F, GLY123F, GLY187F, GLY283C, LEU121F, LEU274C, LEU277C, LYS124F, LYS158F, PHE284C, PRO189F, SER117F, SER271C, THR120F, THR373F, VAL281C