1YL4
crystal structure of 70s ribosome with thrs operator and trnas. 30s subunit. the coordinates for the 50s subunit are in the pdb entry 1yl3
Total interactions analyzed 276
Total true interactions 24
Strongest Interaction Chains I-U
Int. Res. 89
Norm. En. per Res. -4.0136
Hub Node F(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
Download
Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
E-H 0.0 0.0 -0.024 -0.024 6 0 0 23 0 0 2
E-K 0.0 -54.4404 -53.9858 -108.4262 35 7 0 2340 2 14 14
F-G 0.0 0.0 -0.0712 -0.0712 3 0 0 22 0 0 4
F-H -7.7353 -36.3222 -21.6949 -65.7524 17 5 0 992 2 4 5
F-M 0.0 5.9737 -58.0027 -52.029 48 11 1 2923 0 14 21
F-Q -6.7337 -1.079 -134.386 -142.1987 71 32 2 7093 0 15 36
G-H -48.7095 -4.9055 -20.527 -74.142 46 16 0 2471 3 6 12
H-K -16.8889 -31.0119 -94.8071 -142.7079 65 39 3 5962 4 40 39
I-R 0.0 0.0 -5.6167 -5.6167 7 3 0 324 0 7 3
I-U -105.5388 -67.6937 -183.974 -357.2065 89 105 8 11188 5 14 24
J-L 0.0 4.1074 -34.5327 -30.4253 41 1 5 2102 0 5 9
J-N 0.0 0.0 -50.1036 -50.1036 27 8 3 2268 0 2 7
K-O 0.0 0.0 -8.8619 -8.8619 11 0 0 527 0 0 1
K-T 0.0 4.7206 -27.7827 -23.0621 15 10 0 1252 0 2 9
L-M 0.0 0.0 -21.7078 -21.7078 21 9 0 1419 1 9 18
L-P 0.0 4.1798 -3.1406 1.0391 7 0 0 195 0 0 4
L-Q 0.0 0.0 -20.815 -20.815 9 1 0 482 0 0 0
M-Q -38.6679 24.8682 -184.671 -198.4707 53 35 5 8249 0 18 37
N-U -32.5032 -26.6106 -44.221 -103.3347 36 25 2 3000 1 12 17
O-T -3.6887 0.0 -31.2714 -34.9601 21 4 3 1621 0 0 7
P-V 0.0 7.9355 -20.8293 -12.8938 37 0 0 1749 0 6 18
P-X 0.0 1.2962 -4.1595 -2.8632 12 0 0 329 0 2 7
Q-V 0.0 0.0 -0.1037 -0.1037 7 0 0 36 0 1 3
R-T 0.0 0.0 -1.9002 -1.9002 11 0 0 203 0 12 7