1YD6

crystal structure of the giy-yig n-terminal endonuclease domain of uvrc from bacillus caldotenax

• Total interactions analyzed: 6
• Total true interactions: 6
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 48
  • Norm. En. per Res.: -2.2945
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-11.5619	-0.7795	-97.7938	-110.1352	48	2	7	4539	2	15	18
A-C	0.0	0.0	-0.5821	-0.5821	8	0	0	148	0	0	2
A-D	-8.1893	-3.6228	-85.086	-96.8981	49	2	6	4216	2	15	18
B-C	0.0	3.3126	-88.9926	-85.68	43	0	7	4099	0	10	13
B-D	0.0	0.0	-0.6845	-0.6845	8	0	0	151	0	0	2
C-D	-10.9906	17.4034	-101.693	-95.2803	49	2	7	4824	2	19	17

Interface residues

• A-B: ALA72A, ALA72B, ALA74A, ALA74B, ARG40B, ASN71B, ASN80A, ASN80B, ASN90B, ASP86A, ASP95B, CYS18A, GLU64A, GLU73A, GLU73B, GLU78A, GLU78B, GLY17A, GLY32B, HIS85A, ILE66A, ILE76A, ILE76B, ILE82A, ILE82B, LEU20A, LEU75A, LEU75B, LEU77A, LEU77B, LEU81A, LYS33B, LYS35B, LYS83A, LYS83B, LYS84A, MET79A, MET79B, SER69A, SER69B, SER70A, SER70B, THR27A, THR68A, TYR30B, TYR65A, VAL31A, VAL67A
• A-C: ASN80A, ASN80C, GLU73A, GLU73C, ILE76A, ILE76C, LYS83A, LYS83C
• A-D: ALA72A, ALA72D, ALA74A, ALA74D, ARG40A, ASN71A, ASN80A, ASN80D, ASN90A, ASP86D, ASP95A, CYS18D, GLU64D, GLU73A, GLU73D, GLU78A, GLU78D, GLY17D, GLY32A, HIS85D, ILE66D, ILE76A, ILE76D, ILE82A, ILE82D, LEU20D, LEU75A, LEU75D, LEU77A, LEU77D, LEU81A, LEU81D, LYS33A, LYS35A, LYS83A, LYS83D, LYS84D, LYS94A, MET79A, MET79D, SER69A, SER69D, SER70A, THR27D, THR68D, TYR30A, TYR65D, VAL31A, VAL67D
• B-C: ALA72B, ALA72C, ALA74B, ALA74C, ASN71C, ASN80B, ASN80C, ASN90C, ASP86B, CYS18B, GLU64B, GLU73B, GLU73C, GLU78B, GLU78C, GLY17B, HIS85B, ILE66B, ILE76B, ILE76C, ILE82B, ILE82C, LEU20B, LEU75B, LEU75C, LEU77B, LEU77C, LEU81B, LYS33C, LYS35C, LYS83B, LYS83C, LYS84B, LYS94C, MET79B, MET79C, SER69B, SER70B, SER70C, THR68B, TYR65B, VAL31B, VAL67B
• B-D: ASN80B, ASN80D, GLU73B, GLU73D, ILE76B, ILE76D, LYS83B, LYS83D
• C-D: ALA72C, ALA72D, ALA74C, ALA74D, ASN71D, ASN80C, ASN80D, ASN90D, ASP86C, ASP96D, CYS18C, GLU64C, GLU73C, GLU73D, GLU78C, GLU78D, GLY17C, GLY32D, HIS85C, ILE66C, ILE76C, ILE76D, ILE82C, ILE82D, LEU20C, LEU75C, LEU75D, LEU77C, LEU77D, LEU81C, LYS33D, LYS35D, LYS83C, LYS83D, LYS84C, LYS94D, MET79C, MET79D, SER69C, SER69D, SER70C, SER70D, THR27C, THR68C, TYR30D, TYR65C, VAL31C, VAL31D, VAL67C