1Y1V
refined rna polymerase ii-tfiis complex
Total interactions analyzed 78
Total true interactions 33
Strongest Interaction Chains A-B
Int. Res. 776
Norm. En. per Res. -4.187
Hub Node B(11)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -411.1985 -361.3491 -2476.56 -3249.1076 776 250 58 110744 23 253 234
A-C -9.765 -0.207 -64.0834 -74.0554 52 8 0 2851 0 15 19
A-D 0.0 0.0 -9.4704 -9.4704 19 0 2 595 0 11 4
A-E -44.4585 -76.0173 -507.482 -627.9578 209 54 13 23153 7 79 62
A-F -74.4758 -34.3633 -456.343 -565.1821 174 27 14 21114 2 61 54
A-G -15.077 -59.6085 -120.733 -195.4185 66 11 4 5651 2 23 16
A-H -36.3064 -4.8079 -350.431 -391.5454 138 49 12 17182 2 36 35
A-I -49.2904 -23.3536 -340.193 -412.837 143 26 9 15461 5 46 41
A-K -20.4101 -32.2896 -235.237 -287.9367 91 12 8 9708 1 23 18
A-S -50.6935 -40.8506 -176.74 -268.2842 259 108 4 19844 9 67 60
B-C -70.9964 -89.9079 -448.02 -608.9244 171 27 5 17760 7 58 60
B-D 0.0 0.0 -12.139 -12.139 29 0 1 962 0 17 18
B-E 0.0 0.0 -2.9844 -2.9844 8 3 0 377 0 2 2
B-F 0.0 0.0 -10.3288 -10.3288 23 3 0 524 0 4 6
B-G -9.1789 -3.5773 -16.2973 -29.0535 28 2 0 1058 0 6 4
B-H 0.0 0.0 -0.4933 -0.4933 2 0 0 49 0 0 0
B-I -3.5945 -60.9987 -234.993 -299.5862 135 29 2 12107 1 46 55
B-J -17.7932 -21.8515 -366.143 -405.7878 139 29 6 17481 2 36 37
B-K -7.2371 -26.2996 -72.6024 -106.1391 54 5 0 3301 2 16 19
B-L -40.6954 -70.8915 -199.177 -310.7639 112 19 8 10362 5 43 45
B-S -19.9634 -10.0239 -52.7562 -82.7435 35 13 1 3168 0 17 9
C-H 0.0 -7.0327 -25.9965 -33.0292 25 0 1 1412 0 8 7
C-J -44.6689 -6.8346 -221.268 -272.7715 109 27 9 11921 5 36 23
C-K -34.2948 -25.9835 -458.241 -518.5193 154 36 17 22020 7 47 48
C-L -49.8927 -63.3276 -129.61 -242.8303 60 17 9 5960 4 24 16
D-G -42.6073 -0.6501 -492.612 -535.8695 195 54 23 23425 5 54 49
E-F -3.8159 -24.1317 -33.252 -61.1996 20 0 0 1551 1 6 8
E-S 0.0 0.0 -2.119 -2.119 7 0 0 113 0 0 0
F-G -9.002 -7.8839 -109.28 -126.1659 52 17 1 5190 1 10 8
H-K 0.0 0.0 -23.9922 -23.9922 28 0 0 1643 0 5 5
I-S 0.0 0.0 -0.0006 -0.0006 2 0 0 1 0 1 0
J-L 0.0 0.0 -10.7232 -10.7232 10 0 0 560 0 1 1
K-L 0.0 7.7351 -1.9348 5.8003 6 0 0 243 0 3 2