1XPP

crystal structure of ta1416,dna-directed rna polymerase subunit l, from thermoplasma acidophilum

• Total interactions analyzed: 6
• Total true interactions: 6
• Strongest Interaction:
  • Chains: A-C
  • Int. Res.: 15
  • Norm. En. per Res.: -7.0727
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-81.7464	-16.3052	-167.116	-265.1677	137	48	18	19060	3	60	48
A-C	-19.6375	-26.7559	-59.6977	-106.0911	15	8	0	1518	4	12	10
A-D	-8.4167	-38.468	-27.8972	-74.7818	23	3	0	1219	3	11	10
B-C	-21.1541	-10.19	-14.769	-46.1131	20	2	0	967	0	11	10
B-D	-39.0121	17.1352	-58.2671	-80.144	28	9	0	2746	0	4	9
C-D	-23.5655	45.7582	-271.551	-249.3583	137	38	18	19272	3	58	45

Interface residues

• A-B: ALA75A, ALA75B, ALA79A, ALA79B, ARG100A, ARG100B, ARG12A, ARG12B, ARG34A, ARG34B, ARG78A, ARG78B, ARG81A, ARG81B, ASN27A, ASN27B, ASN30A, ASN30B, ASP104B, ASP29A, ASP29B, ASP89A, ASP89B, GLN73A, GLN73B, GLN93A, GLN93B, GLN95A, GLN95B, GLN99A, GLN99B, GLU102A, GLU102B, GLU17A, GLU17B, GLU24A, GLU24B, GLU38A, GLU38B, GLU39A, GLU39B, GLU88A, GLU88B, GLU8A, GLU8B, GLU97A, GLU97B, GLY91A, GLY91B, HIS105A, HIS105B, ILE14A, ILE14B, ILE21A, ILE21B, ILE26A, ILE26B, ILE40A, ILE40B, ILE63A, ILE63B, ILE76A, ILE76B, LEU11A, LEU11B, LEU32A, LEU32B, LEU33A, LEU33B, LEU36A, LEU36B, LEU83A, LEU83B, LEU86A, LEU86B, LEU90A, LEU90B, LYS16A, LYS16B, LYS42A, LYS42B, LYS71A, LYS71B, LYS77A, LYS77B, LYS82A, LYS82B, LYS85A, LYS85B, LYS96A, LYS96B, MET25A, MET25B, PHE94A, PHE94B, PHE98A, PHE98B, PRO72A, PRO72B, SER103B, SER10A, SER10B, SER15A, SER15B, SER20A, SER20B, SER74A, SER74B, SER84A, SER84B, SER9A, SER9B, THR22A, THR22B, THR31A, THR31B, THR35A, THR35B, THR92A, THR92B, TYR101A, TYR101B, TYR28A, TYR28B, TYR51A, TYR87A, TYR87B, VAL13A, VAL13B, VAL23A, VAL23B, VAL37A, VAL37B, VAL65A, VAL65B, VAL80A, VAL80B
• A-C: ARG100A, ARG100C, ASP104A, ASP104C, GLU102A, GLU102C, GLU97A, GLU97C, HIS105A, HIS105C, PHE98A, SER103A, SER103C, TYR101A, TYR101C
• A-D: ARG100A, ARG12D, ASN60D, ASP104A, ASP59D, ASP89A, GLN62D, GLN93A, GLN99A, GLU102A, GLU24D, GLU97A, HIS105A, ILE14D, ILE26D, LYS16D, LYS96A, PHE98A, SER103A, SER15D, THR92A, TYR101A, VAL13D
• B-C: ARG100C, ARG12B, ASN60B, ASP104C, ASP59B, ASP89C, GLN62B, GLN93C, GLU24B, GLU97C, ILE14B, ILE26B, LEU11B, LYS16B, LYS96C, SER15B, THR22B, THR92C, VAL13B, VAL23B
• B-D: ALA7D, ARG12B, ARG12D, ASN27B, ASN27D, ASN60B, ASN60D, ASP59B, ASP59D, GLU24B, GLU24D, GLU8B, GLU8D, ILE26B, ILE26D, LEU11B, LEU11D, MET25D, PRO61B, PRO61D, SER10B, SER10D, SER9B, SER9D, TYR28B, TYR28D, VAL13B, VAL13D
• C-D: ALA75C, ALA75D, ALA79C, ALA79D, ARG100C, ARG100D, ARG12C, ARG12D, ARG34C, ARG34D, ARG78C, ARG78D, ARG81C, ARG81D, ASN27D, ASN30C, ASN30D, ASP104C, ASP104D, ASP29C, ASP29D, ASP89C, ASP89D, GLN73C, GLN73D, GLN93C, GLN93D, GLN95C, GLN95D, GLN99C, GLN99D, GLU102C, GLU102D, GLU17C, GLU17D, GLU24C, GLU24D, GLU38C, GLU38D, GLU39C, GLU39D, GLU88C, GLU88D, GLU8C, GLU8D, GLU97C, GLU97D, GLY91C, GLY91D, HIS105C, ILE107D, ILE14C, ILE14D, ILE21C, ILE21D, ILE26C, ILE26D, ILE40C, ILE40D, ILE63C, ILE63D, ILE76C, ILE76D, LEU11C, LEU11D, LEU32C, LEU32D, LEU33C, LEU33D, LEU36C, LEU36D, LEU83C, LEU83D, LEU86C, LEU86D, LEU90C, LEU90D, LYS16C, LYS16D, LYS42C, LYS42D, LYS71C, LYS71D, LYS77C, LYS77D, LYS82C, LYS82D, LYS85C, LYS85D, LYS96C, LYS96D, MET106D, MET25C, MET25D, PHE94C, PHE94D, PHE98C, PHE98D, PRO72C, PRO72D, SER103D, SER10C, SER10D, SER15C, SER15D, SER20D, SER74C, SER74D, SER84C, SER84D, SER9C, SER9D, THR22C, THR22D, THR31C, THR31D, THR35C, THR35D, THR92C, THR92D, TYR101C, TYR101D, TYR28C, TYR28D, TYR51C, TYR87C, TYR87D, VAL13C, VAL13D, VAL23C, VAL23D, VAL37C, VAL37D, VAL65C, VAL65D, VAL80C, VAL80D