1XNR
crystal structure of an inosine-cytosine wobble base pair in the context of the decoding center
Total interactions analyzed 253
Total true interactions 25
Strongest Interaction Chains J-N
Int. Res. 55
Norm. En. per Res. -5.6175
Hub Node C(4)
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Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-C 0.0 0.0 -0.4024 -0.4024 7 0 0 92 0 2 3
B-E 0.0 0.0 -0.0063 -0.0063 5 0 0 8 0 0 2
B-H -15.1849 -37.7701 -67.9671 -120.9221 33 5 0 2827 2 17 17
C-D 0.0 0.0 -1.7117 -1.7117 6 0 0 175 0 0 7
C-E 0.0 -26.0205 -9.41 -35.4305 14 2 0 599 2 4 3
C-J 0.0 11.2013 -75.8596 -64.6583 60 5 2 3324 0 16 27
C-N -11.673 10.4853 -193.196 -194.3837 73 11 3 8571 0 18 42
D-E 0.0 -27.2205 -47.602 -74.8225 45 2 0 2633 0 8 10
E-H -51.203 -44.0774 -141.883 -237.1634 63 18 2 6553 2 44 42
F-O 0.0 0.0 -2.4699 -2.4699 4 0 0 184 0 3 3
F-R -63.7959 -28.3165 -270.922 -363.0345 85 23 9 10759 1 12 23
G-I 0.0 2.7065 -28.0989 -25.3924 33 4 4 1964 0 4 9
G-K 0.0 0.0 -53.8924 -53.8924 27 0 4 2361 0 3 7
G-V 0.0 0.0 -0.0519 -0.0519 2 0 0 21 0 1 0
H-L 0.0 0.0 -7.2188 -7.2188 10 2 0 443 0 0 1
H-Q 0.0 3.4249 -20.4367 -17.0118 16 3 0 1104 0 2 8
I-J 0.0 -0.8323 -36.4644 -37.2967 18 0 0 1359 0 10 17
I-M 0.0 1.9986 -1.8 0.1986 7 10 0 385 0 0 3
I-N 0.0 0.0 -15.1002 -15.1002 7 0 0 525 0 0 0
J-N -37.9479 -48.2402 -222.773 -308.9611 55 24 6 8744 3 14 34
K-R -27.7095 -16.6856 -81.299 -125.694 40 12 2 3913 1 14 18
L-Q -2.884 0.0 -48.5629 -51.4469 22 2 4 2231 0 0 8
M-S -6.6623 8.7075 -56.5933 -54.5481 44 2 0 3179 0 9 22
M-V 0.0 0.0 -1.975 -1.975 11 0 0 299 0 3 9
O-Q 0.0 -1.1708 -0.3247 -1.4955 9 0 0 81 0 8 6