1XM5

crystal structure of metal-dependent hydrolase ybey from e. coli, pfam upf0054

• Total interactions analyzed: 6
• Total true interactions: 5
• Strongest Interaction:
  • Chains: B-C
  • Int. Res.: 87
  • Norm. En. per Res.: -2.2665
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	0.0	0.0	-0.2207	-0.2207	2	0	0	51	0	0	1
A-C	-29.0105	-32.5515	-32.5712	-94.1332	51	6	0	2063	6	61	45
A-D	-3.7189	8.9539	-166.907	-161.672	90	20	2	7532	1	18	34
B-C	-11.9423	-17.9789	-167.264	-197.1852	87	12	0	7369	1	16	31
B-D	-3.1053	-25.9779	-22.7417	-51.8249	36	2	0	1362	5	37	38

Interface residues

• A-B: PRO1076A, PRO2076B
• A-C: ARG1059A, ARG3059C, ASN1055A, ASN1066A, ASN3055C, ASN3066C, ASP1123A, ASP1127A, ASP1128A, ASP3123C, ASP3127C, ASP3128C, GLN1100A, GLN3100C, GLU1073A, GLU1096A, GLU1126A, GLU1129A, GLU3073C, GLU3096C, GLU3099C, GLU3126C, GLU3129C, GLY1060A, GLY1121A, GLY3060C, GLY3121C, HIS1118A, HIS1124A, HIS3114C, HIS3118C, HIS3124C, ILE1125A, ILE3125C, LEU3056C, LYS1061A, LYS1063A, LYS3061C, LYS3063C, PRO1064A, PRO1071A, PRO3064C, THR1065A, THR3065C, TYR1122A, TYR1150A, TYR3122C, TYR3150C, VAL1092A, VAL3067C, VAL3092C
• A-D: ALA1011A, ALA1049A, ALA4011D, ALA4049D, ARG1044A, ARG1059A, ARG4044D, ARG4059D, ASN1055A, ASN4055D, ASP1007A, ASP1047A, ASP1062A, ASP1085A, ASP4007D, ASP4047D, ASP4062D, ASP4085D, GLN1009A, GLN4009D, GLU1013A, GLU1040A, GLU1050A, GLU1073A, GLU1079A, GLU4013D, GLU4038D, GLU4040D, GLU4050D, GLU4073D, GLU4079D, GLY1060A, GLY1077A, GLY1084A, GLY4060D, GLY4077D, GLY4084D, HIS1052A, HIS4052D, ILE1043A, ILE4005D, LEU1054A, LEU1056A, LEU1082A, LEU4010D, LEU4054D, LEU4056D, LEU4082D, LEU4083D, LYS1061A, LYS1063A, LYS4061D, LYS4063D, MET1078A, MET1080A, MET4078D, MET4080D, PHE1070A, PHE1072A, PHE4070D, PHE4072D, PRO1064A, PRO1071A, PRO1075A, PRO1076A, PRO4064D, PRO4071D, PRO4075D, PRO4076D, SER1051A, SER1053A, SER1069A, SER1081A, SER4051D, SER4053D, SER4069D, SER4081D, THR1042A, THR1048A, THR1057A, THR4042D, THR4048D, THR4057D, TYR1058A, TYR4058D, VAL1046A, VAL1074A, VAL4046D, VAL4074D, VAL4087D
• B-C: ALA2011B, ALA2049B, ALA3011C, ALA3049C, ARG2044B, ARG2059B, ARG3044C, ARG3059C, ASN2055B, ASN3055C, ASP2007B, ASP2047B, ASP2062B, ASP2085B, ASP3007C, ASP3047C, ASP3062C, ASP3085C, GLN2009B, GLN3009C, GLU2013B, GLU2040B, GLU2050B, GLU2073B, GLU2079B, GLU3013C, GLU3040C, GLU3050C, GLU3073C, GLU3079C, GLY2060B, GLY2077B, GLY2084B, GLY3060C, GLY3084C, HIS2052B, HIS3052C, ILE2005B, ILE2043B, LEU2054B, LEU2056B, LEU2082B, LEU3054C, LEU3056C, LEU3082C, LYS2061B, LYS2063B, LYS3061C, LYS3063C, MET2078B, MET2080B, MET3078C, MET3080C, PHE2070B, PHE2072B, PHE3070C, PHE3072C, PRO2064B, PRO2071B, PRO2075B, PRO2076B, PRO3064C, PRO3071C, PRO3075C, PRO3076C, SER2051B, SER2053B, SER2069B, SER2081B, SER3051C, SER3053C, SER3069C, SER3081C, THR2042B, THR2048B, THR2057B, THR3042C, THR3048C, THR3057C, TYR2058B, TYR3058C, VAL2046B, VAL2074B, VAL2087B, VAL3046C, VAL3074C, VAL3087C
• B-D: ARG2059B, ARG4059D, ASN2055B, ASN2066B, ASN4055D, ASN4066D, ASP2123B, ASP2128B, ASP4123D, ASP4128D, GLU2073B, GLU2126B, GLU2129B, GLU4096D, GLU4126D, GLU4129D, GLY2121B, GLY4060D, GLY4121D, HIS2118B, HIS2124B, HIS4124D, ILE2125B, ILE4125D, LEU4056D, LYS2061B, LYS2063B, LYS4061D, LYS4063D, PRO2064B, PRO2071B, THR2065B, THR4057D, THR4065D, TYR2122B, TYR4122D