1W2B

trigger factor ribosome binding domain in complex with 50s

• Total interactions analyzed: 496
• Total true interactions: 31
• Strongest Interaction:
  • Chains: 5-R
  • Int. Res.: 32
  • Norm. En. per Res.: -4.6358
• Hub Node: C(5)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
1-Q	0.0	0.0	-0.0204	-0.0204	3	0	0	15	0	0	1
1-R	-8.052	-4.452	-44.3986	-56.9027	24	1	0	2190	0	19	11
1-S	0.0	0.0	-0.035	-0.035	2	0	0	9	0	2	2
1-Z	0.0	-5.6202	-37.5047	-43.1249	23	7	0	1691	0	19	15
2-K	0.0	0.0	-4.5776	-4.5776	5	0	0	173	0	0	2
2-L	-5.6815	-0.9361	-27.4009	-34.0185	20	10	0	1848	0	5	2
5-O	0.0	0.0	-6.5623	-6.5623	10	0	0	575	0	11	2
5-R	-21.5652	-32.9752	-93.8043	-148.3448	32	8	3	3166	2	11	4
5-U	0.0	0.0	-4.4533	-4.4533	17	0	1	528	0	1	1
A-L	0.0	0.0	-0.0189	-0.0189	3	0	0	12	0	0	1
A-Y	-78.076	-26.4298	-287.083	-391.5888	112	37	13	12509	3	22	24
B-I	-15.3775	-21.8372	-44.0441	-81.2588	33	1	0	1811	1	3	0
B-J	-4.2477	12.948	-54.0829	-45.3826	39	1	0	2678	0	11	20
B-T	-15.2445	9.2688	-40.3897	-46.3654	25	4	0	1356	0	4	5
C-K	0.0	0.0	-0.0025	-0.0025	2	0	0	3	0	0	3
C-N	0.0	4.0741	-39.9971	-35.923	18	2	0	1591	0	7	6
C-S	0.0	0.9663	-12.7145	-11.7482	14	0	0	829	0	3	11
C-X	0.0	0.0	-0.0119	-0.0119	2	0	0	10	0	1	1
C-Z	-10.8193	-14.2667	-44.4207	-69.5067	16	3	0	1482	2	6	6
D-M	-14.4428	-0.3006	-38.0875	-52.8309	27	10	1	2185	0	12	21
E-I	-9.9886	7.6419	-58.8109	-61.1576	25	5	1	2394	0	7	7
F-L	-36.4108	-11.0562	-176.31	-223.777	73	14	3	7983	4	26	27
H-P	0.0	0.0	-0.0241	-0.0241	3	0	0	10	0	0	0
J-T	-56.07	-14.4502	-149.503	-220.0231	53	12	3	5939	1	17	19
K-L	0.0	0.0	-0.0017	-0.0017	2	0	0	5	0	0	1
K-N	0.0	0.0	-11.43	-11.43	24	0	0	914	0	5	5
K-X	0.0	0.0	-10.4684	-10.4684	14	1	0	398	0	0	12
M-P	-6.2295	2.9243	-90.2532	-93.5584	57	7	3	4857	0	11	16
O-R	0.0	0.0	-0.006	-0.006	2	0	0	3	0	1	2
Q-W	0.0	0.0	-0.1039	-0.1039	3	0	0	9	0	0	8
R-U	0.0	-2.6104	-60.4924	-63.1028	42	4	6	3400	0	11	15

Interface residues

• 1-Q: ARG125Q, ARG441, PRO127Q
• 1-R: ALA121, ALA32R, ARG101, ARG31R, ASN161, ASN56R, ASP151, ASP29R, ASP30R, ASP59R, GLN55R, GLU61R, GLY60R, LEU111, LEU141, LYS131, LYS31, LYS51, LYS62R, LYS81, LYS91, MET58R, THR57R, THR71
• 1-S: ASP301, LYS69S
• 1-Z: ALA61, ARG101, ARG20Z, ASP461, ASP481, CYS19Z, GLU24Z, GLU491, GLY11, GLY23Z, HIS16Z, LEU141, LYS131, LYS18Z, LYS25Z, SER26Z, THR14Z, THR15Z, THR17Z, THR29Z, THR471, THR71, TYR27Z
• 2-K: GLN392, ILE362, LYS48K, LYS512, TRP352
• 2-L: ARG74L, ARG82L, ARG85L, ARG90L, ASN432, ASN482, ASN89L, ASP492, GLY452, GLY472, GLY502, ILE462, ILE91L, LYS84L, MET86L, MET87L, SER442, SER83L, THR92L, VAL88L
• 5-O: ALA34O, ARG37O, ARG455, ASP33O, ASP39O, ILE35O, LEU9O, LYS465, LYS485, THR36O
• 5-R: ALA14R, ALA555, ALA78R, ARG455, ASN16R, ASN525, ASP19R, ASP425, GLN565, GLN75R, GLU12R, GLY435, GLY475, GLY82R, HIS9R, ILE415, ILE535, LYS13R, LYS465, LYS485, MET15R, MET18R, MET515, PHE445, PHE84R, PRO505, SER79R, THR11R, VAL10R, VAL495, VAL545, VAL83R
• 5-U: ALA35U, ALA36U, ALA39U, ALA555, ARG575, ASN525, ASP425, GLN565, GLU41U, GLY37U, GLY38U, GLY435, ILE415, ILE535, PHE445, PRO40U, TYR585
• A-L: ARG3A, ARG76L, ASN78L
• A-Y: ALA172A, ALA27Y, ALA50Y, ALA53A, ALA56A, ALA57A, ALA65Y, ALA70A, ALA75Y, ALA78Y, ALA82Y, ALA89A, ARG10Y, ARG13Y, ARG164A, ARG17Y, ARG23Y, ARG25Y, ARG49Y, ARG51A, ASN125A, ASN174A, ASP166A, ASP28Y, ASP44A, ASP48A, ASP78A, CYS60Y, CYS68Y, GLN127A, GLN70Y, GLU101A, GLU30Y, GLU46A, GLU72A, GLU72Y, GLY102A, GLY123A, GLY157A, GLY160A, GLY161A, GLY162A, GLY163A, GLY173A, GLY19Y, GLY51Y, GLY53Y, GLY61Y, GLY66Y, GLY67Y, GLY73A, GLY75A, GLY76Y, GLY77A, GLY91A, HIS33Y, HIS47A, ILE156A, ILE22Y, ILE31Y, ILE45A, ILE54Y, ILE64Y, ILE88A, LEU20Y, LYS167A, LYS171A, LYS21Y, LYS24A, LYS34Y, LYS63Y, LYS77Y, LYS81Y, MET56Y, MET80Y, PHE14Y, PHE169A, PRO100A, PRO104A, PRO168A, PRO40Y, PRO54A, PRO71A, PRO71Y, PRO90A, SER122A, SER52A, THR11Y, THR165A, THR52Y, THR73Y, TRP55Y, TYR18Y, TYR62Y, TYR69Y, VAL103A, VAL105A, VAL124A, VAL158A, VAL159A, VAL170A, VAL24Y, VAL26Y, VAL29Y, VAL41Y, VAL42A, VAL43A, VAL55A, VAL74A, VAL74Y, VAL76A, VAL79Y
• B-I: ALA4I, ARG102I, ARG246B, ARG248B, ARG74I, ARG95B, ASN107I, ASN142I, ASN65I, ASN67I, ASP66I, ASP76I, ASP89B, GLN94B, GLU42I, GLY106I, GLY64I, GLY68I, GLY93B, LEU105I, LYS143I, PRO108I, PRO91B, SER249B, THR144I, THR250B, THR90B, TRP145I, TYR104I, TYR92B, VAL103I, VAL247B, VAL251B
• B-J: ALA3J, ALA6J, ARG115J, ARG43J, ARG5B, ARG62B, ARG81J, ARG82J, ASN42J, ASN55B, ASP84J, GLN119J, GLN221B, GLN2B, GLU2J, GLU66B, GLU67B, GLY39J, GLY5J, GLY85J, HIS50B, LEU4J, LEU53B, LYS224B, LYS41J, LYS8B, MET65B, PRO3B, PRO61B, PRO6B, PRO70B, PRO83J, SER4B, SER60B, THR40J, THR68B, THR86J, VAL52B, VAL69B
• B-T: ASN332B, ASP12T, ASP281B, CYS32T, GLU14T, GLU333B, GLU66B, GLY16T, GLY337B, HIS50B, ILE13T, LYS35T, PRO15T, SER331B, SER334B, SER33T, SER34T, THR17T, THR49B, THR68B, TYR329B, VAL330B, VAL51B, VAL52B, VAL69B
• C-K: ARG8K, HIS90C
• C-N: ARG27C, ARG36C, ARG37N, ARG6N, ASN4N, ASP29C, GLU23C, LEU109C, LEU30C, LEU7N, LYS2N, LYS33C, PRO25C, PRO5N, SER28C, THR24C, THR3N, VAL26C
• C-S: ALA181C, ARG182C, ARG184C, ARG8S, ASP5S, GLN3S, GLN44C, GLY179C, GLY183C, LYS185C, LYS2S, PRO4S, SER180C, TYR186C
• C-X: ALA176C, LYS208X
• C-Z: ALA52C, ALA54Z, ALA58C, ARG55C, ARG79C, ASP49C, GLU50C, GLU56Z, GLY53C, GLY55Z, LEU54C, LYS53Z, PRO57C, SER52Z, THR56C, TYR51C
• D-M: ALA147D, ALA16M, ALA36M, ARG11M, ARG12M, ARG13M, ARG140D, ARG144D, ARG149D, ARG14M, ARG17M, ARG37M, ASN107M, ASN40M, ASP145D, GLU15M, GLY105M, ILE104M, LEU106M, LYS114M, LYS146D, LYS38M, SER108M, SER148D, SER39M, THR18M, VAL115M
• E-I: ARG123I, ARG32E, ASN126I, ASP122I, ASP37E, ASP39E, GLU53E, HIS17E, ILE127I, ILE38E, LEU121I, LEU124I, LEU18E, LEU33E, LYS128I, LYS57E, PHE129I, PHE65E, PRO36E, SER125I, THR61E, TRP34E, TYR35E, VAL130I, VAL40E
• F-L: ALA11L, ALA1L, ALA21L, ALA4L, ALA95F, ARG27L, ARG2L, ARG42F, ARG42L, ARG45L, ARG50L, ARG64L, ARG9L, ASN34F, ASP47L, ASP5F, GLN19L, GLN55F, GLN80F, GLU10L, GLU130L, GLU22L, GLU35F, GLU41F, GLU41L, GLU57F, GLU58F, GLU65F, GLU69F, GLY18L, GLY32F, GLY43F, HIS26L, HIS62F, ILE20L, ILE40F, ILE40L, ILE59F, ILE63F, ILE8L, LEU23L, LEU46L, LEU66F, LYS38F, LYS70F, MET24L, MET61F, PHE76F, PRO1F, PRO43L, PRO56F, PRO64F, SER39F, SER3L, SER6L, THR33F, THR36F, THR37F, THR44L, TRP12L, TRP31L, TYR118L, TYR3F, TYR54L, TYR5L, TYR7L, VAL120L, VAL2F, VAL4F, VAL54F, VAL60F, VAL62L, VAL91F
• H-P: ARG11P, ARG16H, TYR19H
• J-T: ALA114J, ALA27T, ARG115J, ARG4T, ARG75J, ARG77J, ARG81J, ARG82J, ARG87J, ASN38T, ASP25T, ASP41T, ASP84J, ASP92J, GLN76J, GLU14T, GLU37T, GLU91J, GLY111J, GLY16T, GLY18T, GLY26T, GLY85J, HIS23T, HIS30T, ILE113J, ILE131J, ILE13T, ILE80J, LEU49J, LYS110J, LYS24T, LYS89J, MET130J, MET20T, PHE21T, PHE31T, PHE90J, PRO112J, PRO15T, PRO79J, PRO83J, SER34T, THR129J, THR17T, THR19J, THR19T, THR28T, THR29T, THR86J, VAL132J, VAL22T, VAL88J
• K-L: LYS178L, LYS56K
• K-N: ARG115K, ARG50N, ARG67K, ASN72K, ASP70K, GLN113K, GLN71N, GLN91N, GLU49N, GLU68K, GLU71K, GLY46N, GLY66N, GLY68N, HIS116K, LEU70N, LEU75K, LYS88N, SER67N, THR74K, THR84N, THR87N, VAL69N, VAL73K
• K-X: ARG11K, ARG130X, ARG144X, ARG147X, ARG6K, ARG8K, GLN149X, GLN7K, GLY148X, GLY9K, HIS13K, LYS145X, SER10K, THR12K
• M-P: ALA1M, ALA29P, ALA88P, ALA89P, ARG13M, ARG14M, ARG19P, ARG21P, ARG23M, ARG25M, ARG28P, ARG5M, ARG93P, ASN16P, ASN49P, ASN53M, ASP19M, ASP20P, ASP55M, ASP69P, GLN22M, GLN27P, GLU31P, GLU32P, GLY22P, GLY30M, GLY3M, GLY51M, GLY54M, HIS21M, LEU24M, LEU26M, LEU27M, LEU50M, LYS15P, LYS17P, LYS28M, LYS7M, MET10M, PRO18P, PRO25P, PRO26P, PRO48P, PRO4M, PRO52M, PRO9M, SER24P, SER29M, SER46P, THR18M, THR23P, THR87P, TYR20M, TYR6M, VAL30P, VAL47P, VAL8M
• O-R: GLU12R, THR36O
• Q-W: ASP44W, ASP46W, GLU52Q
• R-U: ALA27R, ALA30U, ALA32U, ALA35U, ALA36U, ALA78R, ARG31U, ARG80R, ASN29U, ASP21U, ASP3R, GLN34U, GLN44R, GLU26U, GLY37U, GLY38U, GLY82R, HIS7R, HIS9R, ILE53U, ILE5R, ILE81R, LEU27U, LEU28U, LYS24U, LYS57U, LYS6R, MET15R, PHE26R, PHE84R, PRO40U, PRO8R, SER1R, THR11R, THR25U, TRP2R, TYR45R, VAL10R, VAL33U, VAL41R, VAL4R, VAL83R