1VQP
the structure of the transition state analogue "rap" bound to the large ribosomal subunit of haloarcula marismortui
Total interactions analyzed 496
Total true interactions 27
Strongest Interaction Chains C-1
Int. Res. 16
Norm. En. per Res. -4.1209
Hub Node C(5)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-M 0.0 0.0 -0.4532 -0.4532 4 0 0 83 0 0 3
A-Z -104.4731 -27.1271 -314.249 -445.8492 111 17 7 12767 2 27 23
B-J -8.3032 -20.9571 -41.4325 -70.6928 34 3 0 1934 1 3 0
B-K -10.5592 7.9898 -50.6984 -53.2678 40 3 0 2651 0 11 18
B-U -14.3974 6.355 -41.3838 -49.4263 25 5 0 1344 0 5 5
C-L 0.0 0.0 -0.0031 -0.0031 2 0 0 4 0 0 3
C-O 0.0 4.9485 -42.3835 -37.435 22 3 0 1616 0 8 6
C-T 0.0 0.8752 -13.6998 -12.8246 14 0 0 767 0 3 10
C-Y 0.0 0.0 -0.009 -0.009 2 0 0 7 0 0 1
C-1 -8.7345 -13.9419 -43.2582 -65.9345 16 2 0 1417 2 6 6
D-N -18.2613 0.3795 -42.6986 -60.5804 27 9 1 2316 0 13 20
E-J -12.3996 8.3071 -67.7259 -71.8185 26 9 1 2489 0 7 7
F-M -33.4694 -5.1297 -181.103 -219.7022 74 11 3 7977 4 23 26
H-Q 0.0 0.0 -0.037 -0.037 3 0 0 14 0 0 0
K-U -54.2701 -18.4455 -140.603 -213.3186 54 5 3 5662 1 17 20
L-M 0.0 0.0 -0.0141 -0.0141 2 0 0 12 0 0 1
L-O 0.0 0.0 -12.4318 -12.4318 25 0 0 941 0 5 6
L-Y 0.0 0.0 -11.8766 -11.8766 14 1 0 409 0 0 12
L-3 0.0 0.0 -3.7287 -3.7287 5 0 0 193 0 0 2
M-3 0.0 -1.1964 -29.7446 -30.941 19 1 0 1530 0 4 1
N-Q -12.5063 4.6387 -97.5124 -105.38 55 6 3 4890 0 10 17
R-X 0.0 0.0 -0.0808 -0.0808 3 0 0 6 0 0 8
R-2 0.0 0.0 -0.0646 -0.0646 3 0 0 27 0 0 1
S-V 0.0 -4.3018 -51.9082 -56.21 40 6 4 2877 1 11 14
S-2 -24.0981 -5.689 -53.4762 -83.2632 26 4 0 2404 2 19 11
T-2 0.0 0.0 -0.0317 -0.0317 3 0 0 8 0 2 2
1-2 0.0 -6.2334 -25.5614 -31.7948 24 8 0 1749 0 19 16