1VQM
the structure of the transition state analogue "dan" bound to the large ribosomal subunit of haloarcula marismortui
Total interactions analyzed 496
Total true interactions 28
Strongest Interaction Chains A-Z
Int. Res. 111
Norm. En. per Res. -4.096
Hub Node C(5)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-M 0.0 0.0 -0.285 -0.285 4 0 0 62 0 0 3
A-Z -105.2497 -30.7215 -318.68 -454.6512 111 17 7 12800 2 27 24
B-J -7.2171 -20.0314 -41.5326 -68.7812 34 2 0 1916 1 3 0
B-K -7.8589 8.7787 -50.016 -49.0963 40 2 0 2637 0 11 18
B-U -14.3592 7.9566 -39.2749 -45.6775 26 4 0 1327 0 5 5
C-L 0.0 0.0 -0.003 -0.003 2 0 0 4 0 0 3
C-O 0.0 4.9497 -43.7139 -38.7642 22 3 0 1633 0 8 6
C-T 0.0 1.7775 -13.7717 -11.9942 14 0 0 779 0 3 10
C-Y 0.0 0.0 -0.0114 -0.0114 2 0 0 9 0 0 0
C-1 -4.6409 -14.299 -44.968 -63.908 16 2 0 1432 2 6 6
D-N -8.3268 2.4688 -46.846 -52.7039 27 6 1 2284 0 13 20
E-J -13.4555 9.5639 -66.9033 -70.795 25 9 1 2476 0 7 7
F-M -42.7022 -4.5936 -184.339 -231.6348 74 14 3 7962 4 23 26
H-Q 0.0 0.0 -0.0421 -0.0421 3 0 0 13 0 0 0
K-U -42.6515 -5.9881 -140.392 -189.0316 54 5 3 5616 1 17 19
L-M 0.0 0.0 -0.013 -0.013 2 0 0 11 0 0 1
L-O 0.0 0.0 -13.6932 -13.6932 24 0 0 979 0 5 6
L-Y 0.0 0.0 -11.5919 -11.5919 14 1 0 403 0 0 12
L-3 0.0 0.0 -3.4589 -3.4589 5 0 0 186 0 0 2
M-1 0.0 0.0 -0.0012 -0.0012 2 0 0 4 0 0 0
M-3 0.0 -2.2611 -30.7375 -32.9986 19 3 0 1543 0 4 1
N-Q -6.3566 4.7898 -96.9646 -98.5314 55 4 3 4923 0 10 17
R-X 0.0 0.0 -0.0926 -0.0926 3 0 0 8 0 0 8
R-2 0.0 0.0 -0.0591 -0.0591 3 0 0 25 0 0 1
S-V 0.0 -3.0208 -52.3598 -55.3806 40 4 3 2891 0 11 14
S-2 -23.7467 -4.4671 -51.06 -79.2738 25 3 0 2323 1 19 11
T-2 0.0 0.0 -0.0213 -0.0213 3 0 0 5 0 2 2
1-2 0.0 -5.7604 -42.8612 -48.6216 24 6 0 1759 0 19 16