1VQK
the structure of ccda-phe-cap-bio bound to the a site of the ribosomal subunit of haloarcula marismortui
Total interactions analyzed 496
Total true interactions 27
Strongest Interaction Chains K-U
Int. Res. 53
Norm. En. per Res. -4.0004
Hub Node C(5)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-M 0.0 0.0 -0.6094 -0.6094 4 0 0 92 0 0 3
A-Z -105.7909 -29.3512 -310.695 -445.8371 113 16 7 12763 2 27 23
B-J -12.6841 -20.9745 -43.319 -76.9776 33 3 0 1953 1 3 0
B-K -7.4779 7.7001 -48.2043 -47.9821 38 3 0 2582 0 11 18
B-U -14.0275 7.2466 -39.3451 -46.126 25 5 0 1322 0 4 5
C-L 0.0 0.0 -0.0036 -0.0036 2 0 0 5 0 0 3
C-O 0.0 4.6251 -43.0484 -38.4233 23 4 0 1644 0 8 6
C-T 0.0 0.932 -13.7099 -12.7779 14 0 0 761 0 3 10
C-Y 0.0 0.0 -0.0087 -0.0087 2 0 0 7 0 0 1
C-1 -2.2143 -14.6777 -41.919 -58.8111 16 2 0 1422 2 6 6
D-N -9.3561 0.7118 -43.2286 -51.8729 27 7 1 2267 0 13 20
E-J -14.4666 8.3922 -68.6408 -74.7153 26 7 1 2493 0 7 7
F-M -33.3628 -4.6022 -182.546 -220.511 74 9 3 7934 4 23 26
H-Q 0.0 0.0 -0.0495 -0.0495 3 0 0 16 0 0 0
K-U -53.0573 -18.0755 -140.886 -212.0188 53 5 3 5685 1 17 20
L-M 0.0 0.0 -0.0118 -0.0118 2 0 0 10 0 0 1
L-O 0.0 0.0 -11.773 -11.773 25 0 0 903 0 5 6
L-Y 0.0 0.0 -12.0967 -12.0967 14 1 0 413 0 0 12
L-3 0.0 0.0 -3.4945 -3.4945 5 0 0 193 0 0 2
M-3 0.0 -1.2333 -29.6394 -30.8727 19 2 0 1529 0 4 1
N-Q -5.606 4.4992 -94.5587 -95.6655 54 3 3 4826 0 10 17
R-X 0.0 0.0 -0.0556 -0.0556 3 0 0 5 0 0 8
R-2 0.0 0.0 -0.0798 -0.0798 4 0 0 27 0 0 1
S-V 0.0 -3.1707 -50.6656 -53.8363 37 4 3 2793 0 11 13
S-2 -22.5221 -3.5417 -49.5132 -75.577 25 3 0 2287 1 19 11
T-2 0.0 0.0 -0.0242 -0.0242 3 0 0 6 0 2 2
1-2 0.0 -5.2761 -43.2992 -48.5753 24 9 0 1764 0 19 16