1VQ8
the structure of ccda-phe-cap-bio and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui
Total interactions analyzed 496
Total true interactions 27
Strongest Interaction Chains A-Z
Int. Res. 112
Norm. En. per Res. -4.039
Hub Node C(5)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-M 0.0 0.0 -0.3507 -0.3507 4 0 0 77 0 0 3
A-Z -106.2147 -30.2442 -315.909 -452.3679 112 17 7 12884 2 27 24
B-J -9.4193 -21.4557 -48.3881 -79.2631 34 2 0 1996 0 3 0
B-K -8.3363 9.087 -49.3787 -48.628 38 4 0 2620 0 11 18
B-U -15.6196 7.8443 -38.9648 -46.7401 26 5 0 1344 0 5 5
C-L 0.0 0.0 -0.0032 -0.0032 2 0 0 5 0 0 3
C-O 0.0 4.6317 -43.3572 -38.7255 22 3 0 1633 0 7 6
C-T 0.0 1.0113 -13.8856 -12.8742 14 0 0 785 0 3 10
C-Y 0.0 0.0 -0.0055 -0.0055 2 0 0 5 0 0 0
C-1 0.0 -13.6231 -41.592 -55.2151 16 2 0 1414 1 6 6
D-N -18.4714 3.1467 -40.2826 -55.6074 27 9 1 2260 0 12 20
E-J -13.3688 8.7855 -66.8492 -71.4325 26 9 1 2484 0 7 7
F-M -29.3384 -5.7057 -178.203 -213.2471 73 9 3 7909 4 23 26
H-Q 0.0 0.0 -0.0296 -0.0296 3 0 0 11 0 0 0
K-U -48.3729 -17.7173 -139.812 -205.9022 54 7 3 5582 1 17 19
L-M 0.0 0.0 -0.0114 -0.0114 2 0 0 9 0 0 1
L-O 0.0 0.0 -11.6028 -11.6028 24 0 0 890 0 5 6
L-Y 0.0 0.0 -12.0426 -12.0426 14 1 0 416 0 0 12
L-3 0.0 0.0 -3.6598 -3.6598 5 0 0 192 0 0 2
M-3 0.0 -1.0898 -29.0658 -30.1556 19 3 0 1458 0 4 1
N-Q -4.9161 4.5155 -95.0252 -95.4258 53 3 3 4841 0 11 17
R-X 0.0 0.0 -0.0765 -0.0765 3 0 0 7 0 0 8
R-2 0.0 0.0 -0.0962 -0.0962 3 0 0 32 0 0 1
S-V 0.0 -5.6764 -54.053 -59.7294 39 3 3 2876 1 11 13
S-2 -18.1203 -3.288 -44.505 -65.9133 25 4 0 2288 1 19 11
T-2 0.0 0.0 -0.0228 -0.0228 3 0 0 5 0 2 2
1-2 0.0 -5.3665 -31.858 -37.2245 23 6 0 1742 0 19 16