1VQ7
the structure of the transition state analogue "dca" bound to the large ribosomal subunit of haloarcula marismortui
Total interactions analyzed 496
Total true interactions 27
Strongest Interaction Chains C-1
Int. Res. 16
Norm. En. per Res. -4.1893
Hub Node C(5)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-M 0.0 0.0 -0.49 -0.49 5 0 0 78 0 0 3
A-Z -98.7982 -29.0763 -310.605 -438.4795 111 19 7 12738 2 27 23
B-J -20.7449 -21.5906 -50.1662 -92.5017 34 3 0 1965 1 3 0
B-K -8.4396 6.5912 -41.2071 -43.0555 39 6 0 2644 0 11 18
B-U -15.9863 7.3866 -45.7192 -54.3189 25 4 0 1384 0 5 5
C-L 0.0 0.0 -0.0028 -0.0028 2 0 0 4 0 0 3
C-O 0.0 5.1607 -43.7549 -38.5942 22 5 0 1655 0 7 6
C-T 0.0 0.0 -14.3389 -14.3389 14 0 0 811 0 3 10
C-Y 0.0 0.0 -0.0133 -0.0133 2 0 0 10 0 0 0
C-1 -8.9137 -14.3558 -43.7591 -67.0287 16 3 0 1449 2 6 6
D-N -19.5466 -0.4951 -38.7635 -58.8052 27 9 1 2236 0 13 19
E-J -6.024 7.1718 -68.105 -66.9573 25 6 1 2478 0 7 7
F-M -40.1717 -6.5222 -181.336 -228.0299 73 11 3 7957 4 23 26
H-Q 0.0 0.0 -0.0373 -0.0373 3 0 0 15 0 0 0
K-U -43.8901 -14.589 -142.645 -201.1241 54 4 3 5778 2 17 19
L-M 0.0 0.0 -0.0087 -0.0087 2 0 0 9 0 0 1
L-O 0.0 0.0 -12.53 -12.53 25 0 0 938 0 5 5
L-Y 0.0 0.0 -12.3555 -12.3555 14 1 0 397 0 0 12
L-3 0.0 0.0 -4.5993 -4.5993 5 0 0 198 0 0 2
M-3 0.0 -2.3705 -33.8262 -36.1967 19 1 0 1642 0 4 1
N-Q -8.1438 5.3316 -97.3177 -100.1299 56 5 3 4891 0 10 16
R-X 0.0 0.0 -0.0618 -0.0618 3 0 0 5 0 0 8
R-2 0.0 0.0 -0.1409 -0.1409 4 0 0 40 0 0 1
S-V 0.0 -4.0184 -60.6938 -64.7122 39 3 4 3060 1 11 15
S-2 -19.4329 -6.1353 -48.4036 -73.9718 24 3 0 2331 2 19 11
T-2 0.0 0.0 -0.0336 -0.0336 2 0 0 7 0 2 2
1-2 0.0 -8.3902 -47.1311 -55.5213 23 5 0 1737 1 19 16