1VQ5
the structure of the transition state analogue "raa" bound to the large ribosomal subunit of haloarcula marismortui
Total interactions analyzed 496
Total true interactions 27
Strongest Interaction Chains C-1
Int. Res. 16
Norm. En. per Res. -3.8675
Hub Node C(5)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-M 0.0 0.0 -0.3683 -0.3683 4 0 0 65 0 0 3
A-Z -101.3179 -35.642 -293.577 -430.5369 112 21 7 12501 2 27 23
B-J -19.6261 -22.1369 -47.2122 -88.9753 34 2 0 1959 1 3 0
B-K -6.6911 7.6728 -48.8771 -47.8954 39 5 0 2629 0 11 18
B-U -16.6661 6.7793 -44.2735 -54.1603 25 4 0 1377 0 5 5
C-L 0.0 0.0 -0.0038 -0.0038 2 0 0 5 0 0 3
C-O 0.0 6.7336 -40.9103 -34.1767 20 4 0 1607 0 7 6
C-T 0.0 0.0 -13.6415 -13.6415 14 0 0 776 0 3 10
C-Y 0.0 0.0 -0.014 -0.014 2 0 0 10 0 0 0
C-1 -7.9741 -16.0431 -37.8635 -61.8807 16 5 0 1463 2 6 6
D-N -23.5036 -0.5453 -42.0447 -66.0936 27 9 1 2193 0 13 19
E-J -7.5135 7.0277 -63.9918 -64.4776 25 4 1 2426 0 7 7
F-M -29.74 -5.5945 -174.691 -210.0255 73 12 3 7840 4 23 26
H-Q 0.0 0.0 -0.0283 -0.0283 3 0 0 10 0 0 0
K-U -45.9384 -18.4579 -135.598 -199.9943 54 6 3 5785 1 17 19
L-M 0.0 0.0 -0.011 -0.011 2 0 0 10 0 0 1
L-O 0.0 0.0 -12.8424 -12.8424 25 1 0 956 0 5 6
L-Y 0.0 0.0 -11.5305 -11.5305 13 1 0 382 0 0 12
L-3 0.0 0.0 -4.5449 -4.5449 5 0 0 192 0 0 2
M-3 0.0 -2.2291 -32.5896 -34.8187 19 1 0 1609 0 4 1
N-Q 0.0 5.713 -98.206 -92.493 56 5 3 4890 0 10 16
R-X 0.0 0.0 -0.0535 -0.0535 3 0 0 4 0 0 8
R-2 0.0 0.0 -0.1235 -0.1235 4 0 0 35 0 0 1
S-V 0.0 -1.6754 -55.9753 -57.6507 39 3 3 2951 0 11 13
S-2 -16.0607 -3.818 -45.7391 -65.6179 25 4 0 2274 0 19 11
T-2 0.0 0.0 -0.0471 -0.0471 2 0 0 8 0 2 2
1-2 0.0 -6.2863 -41.2334 -47.5197 23 8 0 1765 0 19 16