1VQ4
the structure of the transition state analogue "daa" bound to the large ribosomal subunit of haloarcula marismortui
Total interactions analyzed 496
Total true interactions 27
Strongest Interaction Chains K-U
Int. Res. 55
Norm. En. per Res. -3.9879
Hub Node C(5)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-M 0.0 0.0 -0.3702 -0.3702 4 0 0 78 0 0 3
A-Z -91.3795 -29.1873 -303.835 -424.4018 114 18 8 12678 3 27 23
B-J -21.7084 -23.0986 -47.7261 -92.5331 32 3 0 1899 1 3 0
B-K -8.5783 6.507 -43.3851 -45.4564 38 4 0 2608 0 11 18
B-U -15.5254 6.2982 -44.381 -53.6082 25 5 0 1352 0 4 5
C-L 0.0 0.0 -0.006 -0.006 2 0 0 6 0 0 3
C-O 0.0 5.5076 -35.8177 -30.3101 20 4 0 1619 0 7 6
C-T 0.0 2.0477 -14.9623 -12.9146 14 0 0 822 0 3 10
C-Y 0.0 0.0 -0.0072 -0.0072 2 0 0 7 0 0 1
C-1 0.0 -12.6317 -44.1601 -56.7918 16 2 0 1435 1 6 6
D-N -16.3289 -1.8457 -26.5041 -44.6787 27 12 1 2174 0 13 20
E-J -10.7748 7.9333 -63.2361 -66.0776 26 9 1 2486 0 7 7
F-M -42.3544 -5.0379 -172.492 -219.8843 72 17 3 7869 4 23 25
H-Q 0.0 0.0 -0.0345 -0.0345 3 0 0 13 0 0 0
K-U -54.6894 -21.1687 -143.474 -219.3321 55 9 3 5846 1 17 20
L-M 0.0 0.0 -0.0175 -0.0175 2 0 0 14 0 0 1
L-O 0.0 0.0 -12.4873 -12.4873 25 0 0 911 0 5 5
L-Y 0.0 0.0 -11.8011 -11.8011 14 1 0 406 0 0 12
L-3 0.0 0.0 -4.5924 -4.5924 5 0 0 190 0 0 2
M-3 0.0 -2.5218 -29.6409 -32.1627 20 1 0 1672 0 4 1
N-Q -3.0045 5.4268 -100.588 -98.1657 55 4 3 4957 0 11 16
R-X 0.0 0.0 -0.063 -0.063 3 0 0 5 0 0 8
R-2 0.0 0.0 -0.0835 -0.0835 3 0 0 27 0 0 1
S-V 0.0 -4.4416 -52.1894 -56.631 39 3 3 2824 1 11 13
S-2 -8.8494 -8.6127 -48.9171 -66.3792 25 3 0 2316 2 19 11
T-2 0.0 0.0 -0.0311 -0.0311 2 0 0 6 0 2 2
1-2 0.0 -3.1418 -38.7708 -41.9126 23 9 0 1746 0 19 15