1VP7

crystal structure of exodeoxyribonuclease vii small subunit (np_881400.1) from bordetella pertussis at 2.40 a resolution

• Total interactions analyzed: 15
• Total true interactions: 5
• Strongest Interaction:
  • Chains: B-E
  • Int. Res.: 42
  • Norm. En. per Res.: -4.4145
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-2.7347	28.8007	-270.137	-244.071	114	9	20	12757	0	26	31
A-C	-49.0577	-23.2394	-124.413	-196.7101	47	2	1	4975	8	20	18
B-E	-45.6683	-20.3602	-119.382	-185.4105	42	4	1	4642	8	19	18
C-D	-8.0108	25.5009	-258.455	-240.9649	107	3	18	11614	0	26	30
E-F	0.0	12.6028	-223.021	-210.4183	97	2	19	10522	0	24	32

Interface residues

• A-B: ALA23A, ALA23B, ALA25A, ALA25B, ALA33A, ALA33B, ALA47A, ALA47B, ALA55A, ALA55B, ALA63A, ALA63B, ALA65A, ALA65B, ARG49A, ARG49B, ARG50A, ARG50B, ARG56A, ARG56B, ARG61A, ARG61B, ARG78A, ARG78B, ASN36A, ASN36B, ASP60A, ASP60B, ASP75A, ASP75B, CYS58A, CYS58B, GLN43A, GLN43B, GLN59A, GLN59B, GLN64A, GLN64B, GLN67A, GLN67B, GLN68A, GLN68B, GLU21A, GLU21B, GLU26A, GLU26B, GLU28A, GLU28B, GLU35A, GLU35B, GLU53A, GLU53B, GLU66A, GLU66B, GLU73A, GLU73B, GLY37A, GLY37B, GLY51A, GLY51B, GLY74A, GLY74B, LEU24A, LEU24B, LEU27A, LEU27B, LEU30A, LEU30B, LEU39A, LEU39B, LEU41A, LEU41B, LEU45A, LEU45B, LEU54A, LEU54B, LEU62A, LEU62B, LEU72A, LEU72B, LEU76A, LEU76B, LEU77A, LEU77B, LEU80A, LEU80B, LYS70A, LYS70B, PHE20A, PHE20B, PRO40A, PRO40B, PRO79A, PRO79B, SER29A, SER29B, SER32A, SER32B, SER44A, SER44B, SER46A, SER46B, TYR48A, TYR48B, VAL31A, VAL31B, VAL52A, VAL52B, VAL57A, VAL57B, VAL69A, VAL69B, VAL71A, VAL71B
• A-C: ALA13A, ALA13C, ARG14A, ARG14C, ARG49A, ARG49C, ARG50A, ARG50C, ARG56A, ARG56C, ARG61A, ARG61C, ASP12C, ASP19A, ASP19C, ASP60A, ASP60C, GLN10C, GLN18A, GLN18C, GLN64A, GLN64C, GLN67A, GLN68A, GLU26A, GLU53A, GLU53C, LEU16A, LEU16C, LEU54A, LEU54C, PHE20A, PHE20C, PRO15A, PRO15C, PRO17A, PRO17C, PRO9C, SER46C, THR11C, THR22A, THR22C, VAL52A, VAL52C, VAL57A, VAL57C, VAL71A
• B-E: ALA13B, ALA13E, ARG14B, ARG14E, ARG49B, ARG49E, ARG50B, ARG50E, ARG56B, ARG56E, ARG61B, ARG61E, ASP12B, ASP19B, ASP19E, ASP60B, ASP60E, GLN10B, GLN18B, GLN18E, GLN64B, GLN64E, GLN68E, GLU53B, GLU53E, LEU16B, LEU16E, LEU54B, LEU54E, PHE20B, PHE20E, PRO15B, PRO15E, PRO17B, PRO17E, THR11B, THR22B, THR22E, VAL52B, VAL52E, VAL57B, VAL57E
• C-D: ALA23C, ALA23D, ALA25C, ALA25D, ALA33C, ALA47C, ALA47D, ALA55C, ALA55D, ALA63C, ALA63D, ALA65C, ALA65D, ARG49C, ARG49D, ARG50C, ARG50D, ARG56C, ARG56D, ARG61C, ARG61D, ARG78C, ARG78D, ASN36C, ASP19C, ASP60C, ASP60D, ASP75C, ASP75D, CYS58C, CYS58D, GLN43C, GLN59C, GLN59D, GLN64C, GLN64D, GLN67C, GLN67D, GLN68C, GLN68D, GLU21C, GLU21D, GLU26C, GLU26D, GLU28C, GLU28D, GLU35C, GLU35D, GLU53C, GLU53D, GLU66C, GLU66D, GLU73C, GLU73D, GLY37C, GLY51C, GLY51D, GLY74C, GLY74D, LEU24C, LEU24D, LEU27C, LEU27D, LEU30C, LEU30D, LEU39C, LEU41C, LEU45C, LEU45D, LEU54C, LEU54D, LEU62C, LEU62D, LEU72C, LEU72D, LEU76C, LEU76D, LEU77C, LEU77D, LEU80D, LYS70C, LYS70D, PHE20C, PHE20D, PRO40C, PRO79C, PRO79D, SER29C, SER29D, SER32C, SER32D, SER44C, SER44D, SER46C, SER46D, TYR48C, TYR48D, VAL31C, VAL31D, VAL52C, VAL52D, VAL57C, VAL57D, VAL69C, VAL69D, VAL71C, VAL71D
• E-F: ALA23E, ALA23F, ALA25E, ALA25F, ALA47E, ALA47F, ALA55E, ALA55F, ALA63E, ALA63F, ALA65E, ALA65F, ARG49E, ARG49F, ARG50E, ARG50F, ARG56E, ARG56F, ARG61E, ARG61F, ARG78E, ARG78F, ASP60E, ASP60F, ASP75E, ASP75F, CYS58E, CYS58F, GLN59E, GLN59F, GLN64E, GLN64F, GLN67E, GLN67F, GLN68E, GLN68F, GLU26E, GLU26F, GLU28E, GLU28F, GLU35E, GLU35F, GLU53E, GLU53F, GLU66E, GLU66F, GLU73E, GLU73F, GLY37E, GLY51E, GLY51F, GLY74E, GLY74F, LEU24E, LEU24F, LEU27E, LEU27F, LEU30E, LEU30F, LEU45E, LEU45F, LEU54E, LEU54F, LEU62E, LEU62F, LEU72E, LEU72F, LEU76E, LEU76F, LEU77E, LEU77F, LYS70E, LYS70F, PHE20E, PHE20F, PRO79E, PRO79F, SER29E, SER29F, SER32E, SER32F, SER44E, SER44F, SER46E, SER46F, TYR48E, TYR48F, VAL31E, VAL31F, VAL52E, VAL52F, VAL57E, VAL57F, VAL69E, VAL69F, VAL71E, VAL71F