1VP0
crystal structure of five 70s ribosomes from escherichia coli in complex with protein y. this file contains the 50s subunit of one 70s ribosome. the entire crystal structure contains five 70s ribosomes and is described in remark 400.
Total interactions analyzed 496
Total true interactions 32
Strongest Interaction Chains U-4
Int. Res. 11
Norm. En. per Res. -1.6916
Hub Node E(5)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
D-1 0.0 0.0 -0.0051 -0.0051 2 0 0 4 0 0 0
E-H 0.0 0.0 -0.0156 -0.0156 2 0 0 4 0 0 0
E-K 0.0 0.0 -12.1277 -12.1277 11 1 0 504 0 0 1
E-L -2.6437 79.5714 7.498 84.4256 18 16 1 1536 0 6 7
E-O 0.0 0.0 -2.5644 -2.5644 7 0 0 369 0 0 5
E-Q 0.0 1.2612 -70.7166 -69.4554 71 7 3 4863 0 10 18
F-M 0.0 98.5555 253.542 352.0975 37 37 1 2569 0 18 22
F-R 0.0 14.5222 -7.6413 6.881 22 25 0 1744 0 0 5
F-T 0.0 0.0 -0.6034 -0.6034 5 0 0 85 0 0 0
F-2 0.0 0.0 -0.8483 -0.8483 5 0 0 145 0 0 0
H-6 0.0 0.0 -3.0685 -3.0685 10 0 2 332 0 1 5
I-1 0.0 -22.2064 9.9856 -12.2208 34 20 0 2702 0 8 11
I-7 0.0 8.3793 58.1199 66.4992 24 9 0 861 0 9 7
K-R 0.0 4.3808 -63.0346 -58.6538 47 6 2 3690 0 7 22
K-S 0.0 0.0 -0.1757 -0.1757 4 0 0 66 0 0 1
L-Q 0.0 -2.3891 -9.0194 -11.4084 38 0 0 1013 0 15 17
M-R 0.0 0.0 -0.0028 -0.0028 2 0 0 3 0 0 1
M-S 0.0 10.9044 -7.4702 3.4342 11 0 0 647 0 0 9
M-5 -13.781 30.3621 599.984 616.565 66 120 1 7040 0 8 38
N-W -52.8485 -14.2635 2097.59 2030.478 88 438 9 11322 0 16 23
O-T 0.0 0.0 -0.1398 -0.1398 6 0 0 34 0 2 2
O-2 0.0 7.0014 -19.328 -12.3266 25 0 0 1336 2 3 10
P-X 0.0 0.0 -0.5511 -0.5511 14 0 0 183 0 1 7
R-S -6.2404 15.1411 109.553 118.4537 73 101 6 5520 0 20 32
R-2 0.0 0.0 -2.0295 -2.0295 15 0 0 283 0 0 11
T-V 0.0 0.0 -0.0016 -0.0016 2 0 0 1 0 0 2
T-2 -3.9746 23.6436 29.1574 48.8264 57 66 7 5581 1 14 33
U-Y -3.5262 2.0384 403.695 402.2072 47 30 3 4309 0 10 9
U-4 0.0 -14.6748 -3.9323 -18.6071 11 0 0 309 0 6 2
V-Y 0.0 0.0 -0.1295 -0.1295 3 0 0 44 0 0 0
1-5 0.0 0.0 -0.001 -0.001 2 0 0 3 0 0 1
3-5 -14.324 -2.3624 349.194 332.5076 21 34 0 1621 0 2 2