1VOX

crystal structure of five 70s ribosomes from escherichia coli in complex with protein y. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains five 70s ribosomes and is described in remark 400.

• Total interactions analyzed: 210
• Total true interactions: 28
• Strongest Interaction:
  • Chains: C-E
  • Int. Res.: 19
  • Norm. En. per Res.: -2.8894
• Hub Node: C(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
B-C	0.0	0.0	-0.1301	-0.1301	3	0	0	41	0	0	2
B-E	-10.16	0.0	-6.7111	-16.8712	14	1	0	401	0	3	7
B-H	0.0	9.0231	-10.3663	-1.3432	34	16	0	2227	0	16	12
C-D	0.0	0.0	-5.1437	-5.1437	5	1	0	194	0	0	6
C-E	-5.3958	-39.3407	-10.1629	-54.8994	19	0	0	571	3	5	4
C-J	-18.9121	8.6414	1598.92	1588.6492	75	157	4	7144	1	28	33
C-N	-3.155	12.1144	-218.198	-209.2385	76	3	3	8297	0	15	35
D-E	0.0	-19.2062	-1.7458	-20.952	44	4	0	1638	2	12	11
D-P	0.0	0.0	-0.0113	-0.0113	2	0	0	7	0	0	0
E-H	0.0	-15.3085	37.6972	22.3887	55	35	2	3639	1	28	35
F-O	0.0	0.0	-0.8143	-0.8143	4	0	0	167	0	2	1
F-R	0.0	58.0552	-70.425	-12.3698	62	31	6	5725	0	10	17
G-I	0.0	4.1589	128.893	133.0519	33	27	4	2246	0	7	12
G-K	-2.4334	-0.187	662.751	660.1306	39	116	2	4546	0	7	11
G-a	0.0	0.0	-0.0018	-0.0018	2	0	0	1	0	0	1
H-L	0.0	0.0	-0.7497	-0.7497	7	0	0	108	0	0	0
H-Q	0.0	0.0	-0.05	-0.05	3	0	0	18	0	0	3
I-J	0.0	0.0	-3.069	-3.069	14	0	0	329	0	4	12
I-M	0.0	0.0	-0.3392	-0.3392	5	0	0	95	0	0	3
I-N	0.0	0.0	2.8601	2.8601	7	10	0	526	0	0	1
I-a	-73.3622	0.4635	1054.24	981.3412	24	133	0	2487	0	2	4
J-N	-51.9964	-8.4463	2465.17	2404.7273	55	314	6	10175	2	17	34
K-R	0.0	-12.1615	8.3466	-3.8149	22	9	0	957	0	7	11
L-Q	-16.4768	0.0	429.323	412.8462	24	83	3	3658	0	1	9
L-a	0.0	-1.0061	-0.0643	-1.0704	3	0	0	9	0	3	1
M-S	-11.5727	-1.0581	629.952	617.3211	45	73	1	4276	0	8	20
M-a	-114.1648	7.9347	1643.81	1537.5799	44	294	0	6697	0	5	13
O-Q	0.0	-19.1763	-5.0248	-24.201	11	0	0	228	1	7	7

Interface residues

• B-C: ARG111B, ARG114B, ARG172C
• B-E: ARG140E, ARG175B, ARG178B, ARG64E, ASN65E, GLU176B, GLU68E, LEU180B, LEU196B, LYS179B, MET66E, PHE181B, THR103B, VAL67E
• B-H: ALA29B, ARG178B, ARG30B, ARG53B, ARG56B, ARG68H, ARG69H, ARG75H, ASP193B, ASP195B, ASP198B, ASP73H, GLN70H, GLU22H, GLU49B, GLU50B, GLY71H, ILE200B, LEU196B, LYS21H, LYS27B, PHE181B, PHE28B, PHE57B, PRO183B, PRO194B, PRO72H, PRO74H, PRO76H, TYR199B, TYR20H, TYR31B, VAL197B, VAL19H
• C-D: ARG131C, ARG132C, ARG47D, ARG49D, ARG50D
• C-E: ARG131C, ARG132C, ARG164C, ARG25E, ARG27E, GLN56E, GLU166C, GLU50E, ILE134C, ILE157C, LEU53E, LYS135C, PHE26E, PRO49E, PRO52E, THR165C, TRP167C, VAL51E, VAL55E
• C-J: ALA24C, ALA60C, ALA61C, ALA65C, ARG11C, ARG16C, ARG21C, ARG43J, ARG45J, ARG51J, ARG59C, ARG60J, ARG66J, ARG70J, ARG9J, ASN3C, ASN63C, ASN69J, ASP12J, ASP17C, ASP58J, ASP62C, ASP89J, GLN28C, GLU58C, GLU61J, GLU64J, GLU95J, GLU97J, GLY10J, GLY13C, GLY25C, GLY2C, GLY52J, GLY93J, GLY9C, HIS13J, HIS56J, HIS62J, HIS68J, HIS6C, ILE14C, ILE57C, ILE5C, ILE96J, LEU12C, LEU16J, LEU32C, LEU33C, LEU65J, LEU8J, LEU90J, LYS14J, LYS26C, LYS4C, LYS7J, LYS99J, PHE10C, PHE11J, PHE47J, PHE63J, PRO91J, SER20C, SER59J, THR15C, THR15J, THR67J, THR92J, TRP18C, TRP22C, TYR23C, TYR29C, VAL64C, VAL66C, VAL94J
• C-N: ALA24C, ALA48N, ALA59N, ARG11C, ARG16C, ARG21C, ARG23N, ARG26N, ARG30C, ARG35N, ARG38C, ARG40C, ARG45N, ARG57N, ARG59C, ASP17C, ASP36C, CYS24N, CYS43N, GLN28C, GLN37C, GLN52N, GLU19C, GLU35C, GLU44C, GLU46N, GLY13C, GLY185C, GLY25C, GLY2C, GLY38N, GLY41C, GLY51N, GLY55N, GLY9C, HIS31C, HIS49N, HIS6C, ILE14C, ILE57C, ILE5C, ILE8C, LEU12C, LEU32C, LEU33C, LEU34C, LEU39N, LEU44N, LEU47N, LEU53N, LYS199C, LYS26C, LYS27C, LYS45C, LYS50N, LYS58N, PHE10C, PHE186C, PHE36N, PHE37N, PRO54N, PRO7C, SER20C, SER60N, THR15C, THR22N, TRP18C, TRP22C, TYR184C, TYR201C, TYR23C, TYR29C, TYR34N, VAL25N, VAL55C, VAL56N
• D-E: ALA102E, ALA104E, ALA108E, ARG107E, ARG191D, ARG209D, ARG37E, ARG49D, ARG50D, ARG57D, ASN199D, ASP117E, ASP53D, GLN201D, GLU111E, GLU205D, GLU8E, GLY114E, GLY87D, GLY90D, GLY97E, GLY99E, ILE101E, ILE11E, ILE13E, ILE204D, LEU202D, LYS85D, LYS86D, LYS9E, MET10E, PRO52E, PRO96E, SER208D, THR116E, THR89D, THR98E, VAL100E, VAL115E, VAL32E, VAL51E, VAL55E, VAL56D, VAL88D
• D-P: ARG131D, THR44P
• E-H: ALA138E, ALA146E, ARG104H, ARG105H, ARG122H, ARG140E, ARG143E, ARG150E, ARG152E, ARG68H, ARG69H, ARG75H, ARG84H, ASP147E, GLN141E, GLN70H, GLN78H, GLU136H, GLU149E, GLU42H, GLU68E, GLU77H, GLU79E, GLU81E, GLY106H, GLY108H, GLY154E, GLY66H, HIS78E, HIS81H, HIS82H, ILE109H, ILE76E, ILE80E, ILE80H, LEU107H, LEU142E, LEU151E, LEU91E, LYS145E, LYS153E, LYS92E, PRO67H, PRO72H, PRO76H, PRO77E, PRO93E, THR144E, TRP138H, TYR65H, VAL137H, VAL148E, VAL67E, VAL79H, VAL82E
• F-O: ARG2F, GLN94F, LYS92F, PRO2O
• F-R: ALA101F, ALA24R, ALA49F, ALA73R, ALA99F, ARG32R, ARG35R, ARG46F, ARG47F, ARG72R, ARG74R, ARG80F, ARG86F, ARG87F, ASN100F, ASN36R, ASN7F, ASP30R, ASP33R, GLN63R, GLU28R, GLU41F, GLU42F, GLU5F, GLU62R, GLY27R, GLY44F, GLY77R, ILE52F, ILE65R, ILE75R, LEU26R, LEU31R, LEU43F, LEU45F, LEU48F, LEU58R, LEU66R, LEU76R, LEU78R, LEU79R, LEU98F, LYS23R, LYS41R, LYS61R, MET89F, PHE29R, PHE60F, PHE81R, PHE97F, PRO51F, PRO80R, PRO96F, THR69R, TRP62F, TYR34R, TYR50F, VAL37R, VAL39R, VAL88F, VAL91F, VAL9F
• G-I: ALA39G, ALA40G, ALA43I, ALA45I, ARG107I, ARG10G, ARG120I, ARG41G, ARG42I, ARG51I, ASN37G, ASP105I, ASP15G, GLN13G, GLN38I, GLU48I, GLY39I, ILE27G, ILE42G, LEU16G, LEU38G, LEU40I, LYS36G, PHE101I, PHE43G, PRO14G, SER71I, THR24G, TYR18G, TYR44G, VAL17G, VAL41I, VAL44I
• G-K: ALA145G, ALA147G, ALA150G, ALA152G, ALA60K, ALA61K, ALA83G, ALA89K, ALA94K, ARG149G, ARG155G, ARG54K, ARG78G, ARG96K, ASN148G, GLN62K, GLN93K, GLU146G, GLU90G, GLU92K, GLY49K, GLY56K, GLY90K, HIS153G, ILE48K, LEU63K, LEU66K, LYS55K, MET73G, MET89G, PRO58K, SER53K, THR57K, TYR151G, TYR154G, TYR50K, TYR59K, TYR85G, VAL80G
• G-a: GLY82G, LYS90a
• H-L: ARG91H, ASN8L, GLY90H, ILE7L, LEU10L, LYS88H, PRO89H
• H-Q: ARG91H, GLY90H, LYS34Q
• I-J: ARG111I, ARG128I, ARG46J, ARG60J, ASP58J, GLU61J, GLY115I, HIS62J, LYS113I, LYS57J, PRO123I, THR48J, TYR114I, TYR125I
• I-M: ARG125M, ARG128I, LYS126M, LYS127I, SER126I
• I-N: ALA59N, ARG111I, GLU110I, LYS112I, LYS113I, SER60N, TRP61N
• I-a: ALA51a, ALA62a, ARG128I, ASN35a, ASN54a, ASN57a, GLN83a, GLY58a, HIS32a, HIS37a, ILE34a, ILE53a, LEU33a, LEU60a, LEU80a, LYS127I, PRO36a, PRO56a, SER126I, THR52a, THR55a, TYR125I, VAL59a, VAL61a
• J-N: ALA48N, ALA59N, ARG29N, ARG41N, ARG45J, ARG45N, ARG46J, ARG51J, ARG57N, ARG60J, ARG66J, ASP12J, CYS40N, CYS43N, GLN52N, GLU46N, GLU61J, GLU64J, GLY10J, GLY51N, GLY52J, GLY55N, GLY93J, HIS13J, HIS49N, HIS62J, HIS68J, ILE42N, ILE50J, LEU16J, LEU39N, LEU44N, LEU47N, LEU53N, LEU65J, LYS50N, LYS58N, PHE11J, PHE36N, PHE37N, PHE47J, PHE54J, PHE63J, PRO53J, PRO54N, SER32N, SER59J, SER60N, THR48J, THR67J, TRP61N, TYR34N, VAL44J, VAL49J, VAL56N
• K-R: ARG74R, ARG87R, ASN117K, ASP110K, ASP111K, GLU83R, GLY118K, GLY48R, HIS116K, ILE108K, LEU85R, LYS84R, LYS88R, PHE81R, PRO115K, THR112K, THR82R, THR87K, VAL109K, VAL114K, VAL84K, VAL86R
• L-Q: ARG12L, ARG15L, ARG38Q, ASN8L, GLN9L, GLU16L, GLY14L, GLY33Q, HIS29Q, ILE36Q, ILE7L, LEU10L, LEU31Q, LYS13L, LYS34Q, LYS37Q, PHE27Q, PRO28Q, PRO30Q, PRO5L, THR6L, TYR32Q, VAL11L, VAL35Q
• L-a: GLU67a, LYS47L, PRO48L
• M-S: ALA75S, ARG102M, ARG104M, ARG3S, ARG78S, ARG80M, ARG81S, ARG88M, ARG91M, ARG94M, ARG99M, ASN65S, ASP83M, CYS86M, GLN101M, GLU64S, GLU73S, GLY100M, GLY68S, GLY72S, GLY85M, GLY89M, HIS69S, HIS92M, ILE62S, ILE84M, LEU71S, LEU81M, LEU90M, LYS111M, LYS70S, MET66S, PHE74S, PRO2S, PRO59S, PRO76S, THR103M, THR63S, THR77S, TYR61S, TYR80S, TYR87M, VAL60S, VAL67S, VAL98M
• M-a: ALA118M, ALA123M, ALA20a, ALA51a, ARG125M, ARG16a, ASN35a, ASN3a, ASN54a, GLN8a, GLU10a, GLY119M, HIS37a, ILE11a, ILE15a, ILE34a, ILE38a, ILE39a, ILE4a, ILE53a, ILE73a, LEU23a, LEU33a, LEU40a, LYS120M, LYS121M, LYS122M, LYS126M, LYS7a, MET2a, MET69a, MET9a, PRO124M, PRO36a, SER41a, SER6a, THR116M, THR12a, THR1a, THR52a, THR5a, VAL117M, VAL19a, VAL59a
• O-Q: ARG64O, ARG68O, ARG72O, ARG81Q, ASP83Q, GLN71O, GLU86Q, ILE90Q, LEU84Q, LYS87Q, MET82Q