1VOV

crystal structure of five 70s ribosomes from escherichia coli in complex with protein y. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains five 70s ribosomes and is described in remark 400.

• Total interactions analyzed: 210
• Total true interactions: 28
• Strongest Interaction:
  • Chains: M-a
  • Int. Res.: 54
  • Norm. En. per Res.: -9.6505
• Hub Node: C(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
B-C	0.0	0.0	-0.0306	-0.0306	3	0	0	23	0	0	0
B-E	0.0	0.0	19.5538	19.5538	11	14	0	420	0	0	5
B-H	0.0	9.5104	-0.3404	9.17	16	0	0	86	0	5	3
C-D	0.0	0.0	-2.7213	-2.7213	6	0	0	235	0	0	7
C-E	0.0	-2.9529	215.951	212.9981	21	27	0	960	0	5	2
C-J	-3.2628	-13.1103	-47.7206	-64.0937	53	6	0	2119	1	10	10
C-N	-6.3915	15.2248	-140.496	-131.6627	81	70	4	9690	0	18	38
D-E	-53.833	-4.1182	435.25	377.2988	66	87	2	5290	3	15	15
D-P	0.0	0.0	-0.0803	-0.0803	2	0	0	24	0	0	0
E-H	0.0	-5.8026	-15.5054	-21.308	37	1	0	1069	0	17	20
F-O	0.0	0.0	3.2528	3.2528	9	9	0	635	0	4	5
F-R	-7.1648	34.2489	0.3305	27.4146	75	69	13	8695	0	12	25
G-I	0.0	-3.3252	321.535	318.2098	38	50	5	2986	0	7	8
G-K	0.0	-8.7015	-7.361	-16.0625	28	10	1	1825	0	6	6
G-M	0.0	0.0	-0.0003	-0.0003	2	0	0	1	0	0	0
H-L	0.0	0.0	-0.2356	-0.2356	3	0	0	51	0	0	0
H-Q	0.0	-0.8472	-7.4109	-8.2582	18	10	0	898	0	5	9
I-J	0.0	19.8363	-58.8741	-39.0378	27	5	0	2788	0	15	31
I-M	0.0	0.0	-0.1909	-0.1909	2	0	0	61	0	0	2
I-N	0.0	0.0	-6.1482	-6.1482	8	12	0	784	0	0	1
I-a	-39.0822	1.199	185.219	147.3358	23	65	0	1686	0	2	3
J-N	-8.5854	-25.1458	114.29	80.5588	39	62	3	4581	2	10	22
K-R	0.0	-11.2869	-16.8072	-28.0941	21	0	1	1012	0	9	11
L-Q	0.0	0.0	-12.0684	-12.0684	20	5	0	750	0	0	8
L-a	0.0	-0.8932	-1.2292	-2.1225	7	0	0	78	0	3	2
M-S	-18.9671	2.673	-74.7056	-90.9997	37	3	1	3312	0	5	21
M-a	-3207.6897	6.471	2680.09	-521.1287	54	429	2	11282	0	6	21
O-Q	0.0	-6.9508	-0.1668	-7.1176	2	0	0	32	0	4	2

Interface residues

• B-C: ARG111B, ARG114B, ARG172C
• B-E: ARG140E, ARG178B, ARG64E, ASN65E, ILE182B, LEU180B, LYS106B, LYS179B, MET66E, PHE181B, TYR60E
• B-H: ARG175B, ARG178B, ARG30B, ARG53B, ARG68H, ARG75H, ASP195B, ASP73H, GLY71H, LEU196B, LYS27B, PHE181B, PRO194B, PRO72H, PRO74H, TYR199B
• C-D: ARG131C, ARG132C, ARG47D, ARG49D, ARG50D, GLN136C
• C-E: ALA168C, ALA169C, ALA54E, ARG131C, ARG132C, ARG15E, ARG164C, ARG25E, GLN139C, GLN170C, GLU166C, GLU50E, ILE134C, LEU53E, LYS135C, PHE26E, PRO49E, PRO52E, TRP167C, VAL51E, VAL55E
• C-J: ALA24C, ALA60C, ALA61C, ARG21C, ARG51J, ARG59C, ARG9J, ASN3C, ASN63C, ASN69J, ASP12J, ASP62C, ASP89J, GLN28C, GLU58C, GLU61J, GLU64J, GLU95J, GLU97J, GLY10J, GLY13C, GLY25C, GLY2C, GLY52J, GLY93J, GLY9C, HIS62J, HIS68J, HIS6C, ILE14C, ILE5C, ILE96J, LEU16J, LEU65J, LEU8J, LEU90J, LYS14J, LYS26C, LYS4C, PHE10C, PHE11J, PHE63J, PRO91J, SER59J, THR15J, THR67J, THR92J, TRP18C, TRP22C, TYR23C, TYR29C, VAL64C, VAL94J
• C-N: ALA187C, ALA20N, ALA24C, ALA48N, ALA59N, ARG11C, ARG16C, ARG21C, ARG23N, ARG26N, ARG30C, ARG35N, ARG38C, ARG40C, ARG45N, ARG57N, ARG59C, ASP17C, ASP36C, CYS24N, CYS43N, GLN28C, GLN37C, GLN52N, GLU19C, GLU35C, GLU44C, GLU46N, GLY13C, GLY185C, GLY25C, GLY2C, GLY38N, GLY41C, GLY51N, GLY55N, GLY9C, HIS31C, HIS49N, HIS6C, ILE14C, ILE57C, ILE5C, ILE8C, LEU12C, LEU178C, LEU33C, LEU34C, LEU39N, LEU42C, LEU44N, LEU47N, LEU53N, LYS199C, LYS26C, LYS27C, LYS45C, LYS4C, LYS50N, LYS58N, LYS9N, PHE10C, PHE186C, PHE36N, PHE37N, PRO54N, PRO7C, SER20C, SER60N, THR15C, THR22N, TRP18C, TRP22C, TYR184C, TYR201C, TYR23C, TYR29C, TYR34N, VAL25N, VAL55C, VAL56N
• D-E: ALA102E, ALA104E, ALA108E, ALA95E, ARG107E, ARG191D, ARG209D, ARG37E, ARG49D, ARG50D, ARG57D, ASN199D, ASP117E, ASP53D, GLN201D, GLU111E, GLU122E, GLU205D, GLU7E, GLU8E, GLY103E, GLY114E, GLY74E, GLY87D, GLY90D, GLY97E, GLY99E, ILE101E, ILE109E, ILE118E, ILE11E, ILE13E, ILE204D, LEU110E, LEU119E, LEU202D, LEU31E, LYS121E, LYS85D, LYS86D, LYS9E, MET10E, PHE206D, PRO106E, PRO51D, PRO96E, SER208D, SER52D, SER83D, SER91D, THR116E, THR120E, THR89D, THR98E, TYR207D, TYR54D, VAL100E, VAL105E, VAL115E, VAL203D, VAL32E, VAL33E, VAL51E, VAL55E, VAL56D, VAL88D
• D-P: ARG131D, THR44P
• E-H: ARG105H, ARG122H, ARG140E, ARG143E, ARG150E, ARG152E, ARG69H, ASP147E, GLN141E, GLN70H, GLN78H, GLU149E, GLU42H, GLU77H, GLU79E, GLU81E, GLY106H, GLY154E, GLY43H, GLY66H, GLY71H, HIS78E, HIS81H, ILE80E, LEU107H, LEU151E, LYS64H, LYS92E, PRO67H, PRO72H, PRO77E, TRP138H, TYR65H, VAL148E, VAL67E, VAL79H, VAL82E
• F-O: ARG2F, GLN94F, GLU69F, GLU6O, ILE3O, LYS92F, MET1F, PRO2O, TYR4F
• F-R: ALA101F, ALA24R, ALA49F, ALA73R, ALA99F, ARG32R, ARG35R, ARG46F, ARG47F, ARG64R, ARG72R, ARG74R, ARG80F, ARG86F, ARG87F, ASN100F, ASN36R, ASN7F, ASP30R, ASP33R, GLN63R, GLU28R, GLU41F, GLU42F, GLU5F, GLU62R, GLU83R, GLY27R, GLY44F, GLY77R, ILE52F, ILE65R, ILE75R, ILE8F, LEU26R, LEU31R, LEU43F, LEU45F, LEU48F, LEU58R, LEU66R, LEU76R, LEU78R, LEU79R, LEU98F, LYS23R, LYS39F, LYS41R, LYS61R, LYS68R, LYS71R, LYS84R, LYS92F, MET89F, PHE29R, PHE60F, PHE81R, PHE97F, PRO51F, PRO56F, PRO80R, PRO96F, SER93F, THR69R, THR82R, TRP62F, TYR34R, TYR50F, VAL37R, VAL39R, VAL6F, VAL88F, VAL90F, VAL91F, VAL9F
• G-I: ALA39G, ALA40G, ALA43I, ALA45I, ALA46I, ARG107I, ARG10G, ARG41G, ARG42I, ARG51I, ASN28G, ASN37G, ASP105I, ASP15G, ASP20G, GLN11G, GLN13G, GLN38I, GLU48I, GLY19G, GLY39I, ILE27G, LEU12G, LEU16G, LEU40I, LYS36G, PHE101I, PHE33I, PRO14G, SER71I, THR24G, TYR18G, TYR44G, VAL17G, VAL21G, VAL23G, VAL41I, VAL44I
• G-K: ALA145G, ALA147G, ALA150G, ALA152G, ALA60K, ARG149G, ARG155G, ARG54K, ARG96K, ASN148G, GLN62K, GLN93K, GLU146G, GLU92K, GLY56K, HIS153G, LEU63K, LEU66K, LYS55K, MET73G, PRO58K, SER53K, THR57K, TYR151G, TYR154G, TYR50K, TYR59K, TYR85G
• G-M: ARG114G, LYS13M
• H-L: ARG91H, ASN8L, ILE7L
• H-Q: ARG91H, ARG92H, GLU99H, GLY33Q, GLY96H, HIS29Q, ILE36Q, ILE86H, LEU133H, LYS34Q, LYS37Q, PRO28Q, PRO30Q, TYR32Q, TYR94H, VAL35Q, VAL93H, VAL95H
• I-J: ALA122I, ARG111I, ARG121I, ARG128I, ARG46J, ARG51J, ARG60J, ASP58J, GLN124I, GLU61J, GLY115I, HIS117I, HIS56J, HIS62J, ILE50J, LYS112I, LYS113I, LYS116I, LYS55J, LYS57J, PRO123I, SER126I, SER59J, THR48J, TYR114I, TYR125I, VAL49J
• I-M: LYS126M, LYS127I
• I-N: ALA59N, ARG111I, GLU110I, LYS112I, LYS113I, SER60N, TRP61N, TYR114I
• I-a: ALA51a, ALA62a, ARG128I, ASN35a, ASN54a, ASP50a, GLY58a, HIS37a, ILE38a, ILE39a, ILE53a, LEU33a, LEU60a, LEU76a, LEU80a, LYS127I, PRO36a, SER126I, THR52a, THR55a, TYR125I, VAL59a, VAL61a
• J-N: ALA48N, ALA59N, ARG29N, ARG41N, ARG45J, ARG45N, ARG46J, ARG51J, ARG57N, ARG60J, ARG66J, ASP12J, GLU61J, GLU64J, GLY52J, GLY55N, HIS49N, HIS62J, ILE42N, ILE50J, LEU44N, LEU53N, LEU65J, LYS58N, PHE11J, PHE36N, PHE37N, PHE47J, PHE54J, PHE63J, PRO53J, PRO54N, SER59J, SER60N, THR48J, TRP61N, TYR34N, VAL49J, VAL56N
• K-R: ARG74R, ARG87R, ASP110K, ASP111K, GLU83R, HIS116K, ILE108K, ILE83K, LEU85R, LYS84R, LYS88R, PHE81R, SER107K, THR112K, THR47R, THR82R, THR87K, VAL109K, VAL114K, VAL84K, VAL86R
• L-Q: ALA105Q, ARG12L, ARG38Q, ARG91Q, ASN8L, ASN94Q, GLN9L, GLY102Q, GLY103Q, ILE36Q, LEU10L, LEU98Q, LYS104Q, LYS13L, LYS37Q, PRO5L, SER97Q, SER99Q, TYR95Q, VAL11L
• L-a: GLN45a, GLU67a, LYS46L, LYS47L, PRO44a, PRO48L, SER50L
• M-S: ALA75S, ARG102M, ARG104M, ARG3S, ARG78S, ARG80M, ARG81S, ARG88M, ARG91M, ARG94M, ARG99M, ASN65S, CYS86M, GLN101M, GLU73S, GLY100M, GLY72S, GLY85M, GLY89M, ILE84M, LEU71S, LEU90M, LEU96M, LYS111M, MET66S, PHE74S, PRO2S, PRO59S, PRO76S, PRO97M, THR103M, THR77S, THR79S, TYR80S, TYR87M, VAL67S, VAL98M
• M-a: ALA118M, ALA123M, ALA14a, ALA20a, ALA24a, ARG104M, ARG125M, ARG16a, ARG22a, ASN35a, ASN3a, ASN54a, ASP21a, GLN17a, GLN30a, GLY119M, HIS18a, HIS32a, HIS37a, ILE11a, ILE15a, ILE34a, ILE38a, ILE39a, ILE4a, ILE53a, ILE73a, ILE77a, LEU23a, LEU26a, LEU33a, LEU40a, LEU60a, LYS120M, LYS121M, LYS122M, LYS126M, LYS25a, MET2a, MET69a, PRO124M, PRO13a, PRO36a, SER6a, THR105M, THR12a, THR1a, THR52a, THR55a, THR5a, TYR70a, VAL117M, VAL19a, VAL59a
• O-Q: ARG72O, ASP83Q