1VOS

crystal structure of five 70s ribosomes from escherichia coli in complex with protein y. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains five 70s ribosomes and is described in remark 400.

• Total interactions analyzed: 210
• Total true interactions: 28
• Strongest Interaction:
  • Chains: I-N
  • Int. Res.: 7
  • Norm. En. per Res.: -4.1166
• Hub Node: C(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
B-C	0.0	0.0	-0.0806	-0.0806	3	0	0	32	0	0	0
B-E	-6.132	7.3681	678.135	679.3711	16	66	0	883	0	1	9
B-H	0.0	8.1757	-2.8839	5.2919	21	0	0	461	0	9	5
C-D	0.0	0.0	152.875	152.875	4	16	0	218	0	0	6
C-E	0.0	0.0	-2.9873	-2.9873	11	0	0	241	0	4	2
C-J	0.0	16.9481	116.631	133.5791	68	24	2	4286	0	19	24
C-N	-3.8644	13.2509	-225.117	-215.7305	77	11	3	8497	0	15	35
D-E	-24.136	0.3041	74.0191	50.1872	64	58	3	5326	2	15	15
D-P	0.0	0.0	-0.0106	-0.0106	2	0	0	8	0	0	1
E-H	0.0	68.6749	120.829	189.5039	78	87	2	5913	0	41	43
F-O	0.0	0.0	-1.3038	-1.3038	9	0	0	201	0	4	2
F-R	-6.9954	37.2624	-26.8773	3.3897	73	56	10	7760	0	11	24
G-I	0.0	-2.6524	-32.2977	-34.9501	31	5	4	2013	0	7	10
G-K	-23.0641	-12.8362	-11.5091	-47.4094	23	11	0	1009	0	6	5
G-a	0.0	0.0	-0.1252	-0.1252	2	0	0	13	0	0	1
H-Q	-30.1961	10.2132	584.817	564.834	20	137	0	2778	0	4	12
I-J	0.0	-0.8006	-14.4157	-15.2163	20	0	0	1010	0	9	18
I-M	0.0	0.0	-1.7744	-1.7744	6	0	0	157	0	0	5
I-N	-7.552	0.0	-21.2641	-28.8161	7	3	0	596	0	0	0
I-a	-15.7182	2.1906	1219.3	1205.7724	29	220	0	3890	0	2	5
J-N	-41.9591	-40.9165	-44.0091	-126.8847	44	51	6	6419	4	10	25
K-R	-18.2487	-11.8181	-43.7748	-73.8416	30	5	2	2120	0	11	16
L-Q	0.0	0.0	5.8394	5.8394	13	6	0	458	0	0	4
L-a	0.0	-0.9505	-0.0677	-1.0182	4	0	0	12	0	3	1
M-S	0.0	5.6046	117.25	122.8546	43	81	2	3960	0	7	22
M-a	-59.744	5.3814	1719.04	1664.6774	36	267	0	4760	0	4	12
N-S	0.0	0.0	-0.2196	-0.2196	6	0	0	61	0	1	2
O-Q	0.0	-4.3549	-1.474	-5.8289	12	0	0	314	0	6	7

Interface residues

• B-C: ARG111B, ARG114B, ARG172C
• B-E: ALA177B, ARG140E, ARG178B, ARG63E, ARG64E, ASN65E, ILE182B, LEU158B, LEU180B, LEU196B, LYS106B, LYS179B, MET66E, PHE181B, PRO183B, TYR60E
• B-H: ARG175B, ARG178B, ARG30B, ARG53B, ARG68H, ARG75H, ASP195B, ASP198B, ASP73H, GLN70H, GLY71H, ILE200B, LEU196B, LYS27B, PHE181B, PRO183B, PRO194B, PRO72H, PRO74H, TYR199B, VAL197B
• C-D: ARG131C, ARG132C, ARG47D, ARG49D
• C-E: ALA168C, ARG164C, ARG25E, GLU166C, GLU50E, ILE134C, LEU53E, LYS135C, PHE26E, PRO52E, TRP167C
• C-J: ALA24C, ALA60C, ALA61C, ALA65C, ARG16C, ARG21C, ARG43J, ARG45J, ARG51J, ARG59C, ARG66J, ARG70J, ARG9J, ASN3C, ASN63C, ASN69J, ASP12J, ASP17C, ASP62C, ASP89J, GLN28C, GLU58C, GLU61J, GLU64J, GLU95J, GLU97J, GLY10J, GLY13C, GLY25C, GLY2C, GLY52J, GLY93J, GLY9C, HIS68J, HIS6C, ILE14C, ILE57C, ILE5C, ILE96J, LEU12C, LEU16J, LEU65J, LEU8J, LEU90J, LYS14J, LYS26C, LYS4C, LYS7J, LYS99J, PHE10C, PHE11J, PHE47J, PHE63J, PRO91J, SER20C, SER59J, THR15C, THR15J, THR67J, THR87J, THR92J, TRP18C, TRP22C, TYR23C, TYR29C, VAL64C, VAL66C, VAL94J
• C-N: ALA24C, ALA48N, ALA59N, ARG11C, ARG16C, ARG21C, ARG23N, ARG26N, ARG30C, ARG35N, ARG38C, ARG40C, ARG45N, ARG57N, ARG59C, ASP17C, ASP36C, CYS24N, CYS43N, GLN28C, GLN37C, GLN52N, GLU19C, GLU35C, GLU44C, GLU46N, GLY13C, GLY185C, GLY25C, GLY2C, GLY38N, GLY41C, GLY51N, GLY55N, GLY9C, HIS31C, HIS49N, HIS6C, ILE14C, ILE57C, ILE5C, ILE8C, LEU12C, LEU32C, LEU33C, LEU34C, LEU39N, LEU44N, LEU47N, LEU53N, LYS199C, LYS26C, LYS27C, LYS45C, LYS4C, LYS50N, LYS58N, PHE10C, PHE186C, PHE36N, PHE37N, PRO54N, PRO7C, SER20C, SER60N, THR15C, THR22N, TRP18C, TRP22C, TYR184C, TYR201C, TYR23C, TYR29C, TYR34N, VAL25N, VAL55C, VAL56N
• D-E: ALA102E, ALA104E, ALA108E, ALA94E, ALA95E, ARG107E, ARG126E, ARG191D, ARG209D, ARG37E, ARG49D, ARG50D, ARG57D, ASN199D, ASP117E, ASP53D, GLN201D, GLU111E, GLU122E, GLU205D, GLU8E, GLY103E, GLY114E, GLY74E, GLY87D, GLY90D, GLY97E, GLY99E, ILE101E, ILE109E, ILE118E, ILE11E, ILE13E, ILE204D, LEU110E, LEU119E, LEU202D, LYS121E, LYS85D, LYS86D, LYS9E, MET10E, PHE206D, PHE79D, PRO96E, SER208D, SER83D, SER91D, THR116E, THR120E, THR89D, THR98E, TYR207D, TYR54D, VAL100E, VAL105E, VAL115E, VAL203D, VAL32E, VAL51E, VAL55E, VAL56D, VAL88D, VAL92D
• D-P: ARG131D, ARG42P
• E-H: ALA138E, ALA146E, ALA40H, ALA94E, ALA95E, ARG104H, ARG105H, ARG122H, ARG140E, ARG143E, ARG150E, ARG152E, ARG41H, ARG64E, ARG68H, ARG69H, ARG75H, ASN65E, ASP121H, ASP147E, ASP73H, GLN141E, GLN70H, GLN72E, GLN78H, GLU123H, GLU137E, GLU149E, GLU42H, GLU68E, GLU77H, GLU79E, GLU81E, GLU83E, GLY106H, GLY108H, GLY154E, GLY43H, GLY66H, GLY71H, HIS78E, HIS81H, HIS82H, ILE109H, ILE45H, ILE76E, ILE80E, ILE80H, LEU107H, LEU139E, LEU142E, LEU151E, LEU39H, LYS145E, LYS153E, LYS46H, LYS64H, LYS92E, MET66E, PHE44H, PHE84E, PRO67H, PRO72H, PRO74H, PRO76H, PRO77E, PRO93E, PRO96E, THR120H, THR144E, THR75E, TRP138H, TYR65H, VAL103H, VAL148E, VAL67E, VAL79H, VAL82E
• F-O: ARG2F, ASN73F, GLN94F, GLU41O, GLU69F, ILE3O, LYS44O, MET1F, PRO2O
• F-R: ALA101F, ALA24R, ALA49F, ALA73R, ALA99F, ARG32R, ARG35R, ARG46F, ARG47F, ARG64R, ARG72R, ARG74R, ARG80F, ARG86F, ARG87F, ASN100F, ASN36R, ASN7F, ASP30R, ASP33R, GLN63R, GLU28R, GLU41F, GLU42F, GLU5F, GLU62R, GLU83R, GLY27R, GLY44F, GLY77R, ILE52F, ILE65R, ILE75R, ILE8F, LEU26R, LEU31R, LEU43F, LEU45F, LEU48F, LEU58R, LEU66R, LEU76R, LEU78R, LEU79R, LEU98F, LYS23R, LYS39F, LYS41R, LYS61R, LYS71R, LYS84R, MET89F, PHE29R, PHE60F, PHE81R, PHE97F, PRO51F, PRO56F, PRO80R, PRO96F, SER93F, THR69R, THR82R, TRP62F, TYR34R, TYR50F, VAL37R, VAL39R, VAL6F, VAL88F, VAL90F, VAL91F, VAL9F
• G-I: ALA40G, ALA43I, ALA45I, ALA46I, ARG107I, ARG10G, ARG41G, ARG42I, ARG51I, ASN37G, ASP105I, ASP15G, ASP33G, GLN13G, GLU48I, GLY19G, GLY39I, LEU12G, LEU16G, LEU40I, LYS118I, LYS36G, PHE101I, PRO14G, SER71I, THR24G, TYR18G, TYR44G, VAL17G, VAL41I, VAL44I
• G-K: ALA145G, ALA147G, ALA150G, ALA152G, ARG149G, ARG155G, ARG54K, ARG96K, ASN148G, GLN62K, GLN93K, GLU146G, GLU92K, GLY56K, HIS153G, LEU63K, PRO58K, SER53K, THR57K, TYR151G, TYR154G, TYR50K, TYR59K
• G-a: GLY82G, LYS90a
• H-Q: ARG91H, ARG92H, GLY33Q, GLY90H, HIS29Q, ILE36Q, ILE86H, LEU133H, LEU31Q, LYS34Q, LYS88H, PHE27Q, PRO28Q, PRO30Q, PRO89H, SER87H, TYR32Q, TYR94H, VAL35Q, VAL93H
• I-J: ARG111I, ARG128I, ARG51J, ARG60J, ASP58J, GLU61J, GLY115I, HIS117I, HIS62J, ILE50J, LYS112I, LYS113I, LYS116I, LYS55J, LYS57J, PRO123I, SER59J, THR48J, TYR114I, TYR125I
• I-M: ARG125M, ARG128I, LYS126M, LYS127I, SER126I, TYR125I
• I-N: ALA59N, ARG111I, LYS112I, LYS113I, SER60N, TRP61N, TYR114I
• I-a: ALA51a, ARG128I, ASN35a, ASN3a, ASN54a, ASN57a, GLN83a, GLY58a, HIS32a, HIS37a, ILE34a, ILE38a, ILE53a, LEU33a, LEU60a, LEU80a, LEU84a, LEU87a, LYS127I, MET2a, PRO36a, PRO56a, SER126I, THR1a, THR52a, THR55a, TYR125I, VAL59a, VAL61a
• J-N: ALA48N, ALA59N, ARG29N, ARG41N, ARG45J, ARG45N, ARG46J, ARG51J, ARG57N, ARG60J, ARG66J, ASP12J, GLU46N, GLU61J, GLU64J, GLY51N, GLY52J, GLY55N, HIS49N, HIS62J, ILE42N, ILE50J, LEU44N, LEU47N, LEU53N, LEU65J, LYS50N, LYS58N, PHE11J, PHE36N, PHE37N, PHE47J, PHE54J, PHE63J, PRO53J, PRO54N, SER32N, SER59J, SER60N, THR48J, TRP61N, TYR34N, VAL49J, VAL56N
• K-R: ARG74R, ARG85K, ARG87R, ARG91K, ASP110K, ASP111K, GLU83R, GLY118K, GLY48R, HIS116K, ILE108K, ILE50R, ILE83K, ILE95K, LEU85R, LYS49R, LYS84R, LYS88R, PHE81R, PRO113K, PRO115K, SER107K, THR112K, THR47R, THR82R, THR87K, VAL109K, VAL114K, VAL84K, VAL86R
• L-Q: ARG12L, ARG38Q, ASN8L, ASN94Q, GLN9L, ILE36Q, LEU98Q, LYS13L, LYS40Q, SER97Q, SER99Q, TYR95Q, VAL11L
• L-a: GLN45a, GLU67a, LYS47L, PRO48L
• M-S: ALA75S, ARG102M, ARG104M, ARG36S, ARG3S, ARG78S, ARG80M, ARG81S, ARG88M, ARG91M, ARG93M, ARG94M, ARG99M, ASN65S, CYS86M, GLN101M, GLU73S, GLY100M, GLY72S, GLY85M, GLY89M, HIS92M, ILE84M, LEU71S, LEU81M, LEU90M, LEU96M, LYS111M, LYS120M, MET66S, PHE74S, PRO2S, PRO76S, PRO97M, SER4S, THR103M, THR105M, THR77S, TYR80S, TYR87M, VAL58S, VAL67S, VAL98M
• M-a: ALA118M, ALA123M, ALA20a, ARG125M, ARG16a, ASN35a, ASN3a, ASN54a, GLU10a, GLY119M, HIS37a, ILE11a, ILE15a, ILE34a, ILE38a, ILE39a, ILE4a, ILE53a, ILE73a, LEU23a, LEU33a, LEU40a, LYS120M, LYS121M, LYS122M, LYS126M, MET2a, MET69a, PRO124M, PRO36a, SER6a, THR12a, THR1a, THR55a, THR5a, VAL19a
• N-S: ARG37S, ASP13S, HIS14S, LYS15N, PHE10S, PHE16N
• O-Q: ARG64O, ARG68O, ARG72O, ASP83Q, GLN71O, GLU73O, GLU86Q, ILE90Q, LEU84Q, LYS87Q, MET82Q, VAL85Q