1VOQ

crystal structure of five 70s ribosomes from escherichia coli in complex with protein y. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains five 70s ribosomes and is described in remark 400.

• Total interactions analyzed: 210
• Total true interactions: 29
• Strongest Interaction:
  • Chains: C-N
  • Int. Res.: 75
  • Norm. En. per Res.: -2.1755
• Hub Node: C(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
B-C	0.0	0.0	-0.1233	-0.1233	4	0	0	38	0	0	2
B-E	-33.5659	8.9454	16.5614	-8.0591	19	8	0	967	0	4	8
B-H	-5.3713	96.5562	34.6517	125.8366	40	26	0	3524	0	16	16
C-D	0.0	0.0	1.7293	1.7293	4	8	0	225	0	0	6
C-E	0.0	0.0	-1.4823	-1.4823	12	0	0	109	0	4	3
C-J	-16.4209	56.8957	948.613	989.0878	80	132	4	7978	0	28	36
C-N	0.0	10.9979	-174.159	-163.1611	75	4	3	7471	0	15	35
D-E	0.0	-23.513	-48.5708	-72.0838	54	5	1	2840	2	12	11
D-P	0.0	0.0	-0.0397	-0.0397	3	0	0	19	0	0	1
E-H	-12.8914	93.0428	936.201	1016.3524	65	203	2	8995	4	42	54
F-O	0.0	0.0	-0.6778	-0.6778	8	0	0	147	0	4	2
F-R	0.0	35.1139	-99.9839	-64.87	69	37	9	6893	0	11	20
G-I	0.0	4.0994	-2.8672	1.2323	27	7	4	1375	0	8	14
G-K	0.0	-9.0757	3.542	-5.5337	28	13	1	1902	0	6	6
G-a	0.0	0.0	-0.0876	-0.0876	2	0	0	9	0	0	1
H-L	0.0	0.0	-0.2285	-0.2285	6	0	0	55	0	0	0
H-Q	0.0	0.0	-0.7276	-0.7276	8	0	0	167	0	1	5
I-J	0.0	0.0	-0.7411	-0.7411	10	0	0	149	0	4	12
I-M	0.0	0.0	-0.453	-0.453	6	0	0	108	0	0	3
I-N	0.0	0.0	-3.1435	-3.1435	8	11	0	610	0	0	0
I-a	-206.5839	2.8272	738.079	534.3223	25	219	0	4036	0	0	5
J-N	-57.955	-26.4311	773.379	688.9929	53	208	8	9064	3	17	31
K-R	0.0	-13.9238	-14.7453	-28.6691	24	0	2	1404	0	9	12
L-Q	0.0	1.2558	79.7765	81.0323	23	29	2	1800	0	0	8
L-a	0.0	0.0	-0.0003	-0.0003	2	0	0	1	0	1	0
M-S	0.0	1.1794	-31.3099	-30.1305	42	20	2	3855	0	8	23
M-a	-88.0171	6.5569	1040.18	958.7199	39	228	0	5032	0	3	12
N-S	0.0	0.0	-0.2464	-0.2464	7	0	0	61	0	0	2
O-Q	0.0	8.5532	-4.6995	3.8537	18	0	0	571	0	12	13

Interface residues

• B-C: ARG111B, ARG114B, ARG172C, GLY171C
• B-E: ALA177B, ARG140E, ARG175B, ARG178B, ARG40E, ARG63E, ARG64E, ASN104B, ASN65E, GLU176B, ILE182B, LEU180B, LEU196B, LYS179B, MET66E, PHE181B, PRO183B, THR103B, TYR60E
• B-H: ALA16H, ALA186B, ALA29B, ARG178B, ARG18H, ARG30B, ARG53B, ARG56B, ARG68H, ARG69H, ARG75H, ASP193B, ASP195B, ASP198B, ASP73H, GLN70H, GLU49B, GLU50B, GLY71H, ILE200B, ILE201B, LEU196B, LYS21H, LYS27B, PHE28B, PHE57B, PRO183B, PRO194B, PRO202B, PRO67H, PRO72H, PRO74H, PRO76H, THR17H, THR54B, TYR199B, TYR20H, TYR31B, VAL197B, VAL19H
• C-D: ARG131C, ARG132C, ARG47D, ARG49D
• C-E: ARG131C, ARG164C, ARG25E, GLU50E, ILE134C, ILE157C, LEU53E, PHE26E, PRO49E, PRO52E, TRP167C, VAL51E
• C-J: ALA100C, ALA24C, ALA60C, ALA61C, ALA65C, ARG11C, ARG16C, ARG21C, ARG43J, ARG45J, ARG51J, ARG59C, ARG60J, ARG66J, ARG70J, ARG9J, ASN102C, ASN3C, ASN63C, ASN69J, ASP12J, ASP17C, ASP58J, ASP62C, ASP89J, GLN28C, GLU58C, GLU61J, GLU64J, GLU95J, GLU97J, GLY10J, GLY13C, GLY25C, GLY2C, GLY52J, GLY93J, GLY9C, HIS13J, HIS68J, HIS6C, ILE14C, ILE57C, ILE5C, ILE96J, LEU12C, LEU16J, LEU32C, LEU33C, LEU40J, LEU65J, LEU8J, LEU90J, LYS14J, LYS26C, LYS27C, LYS4C, LYS7J, LYS99J, PHE10C, PHE11J, PHE47J, PHE63J, PRO91J, SER19J, SER20C, SER59J, THR15C, THR15J, THR67J, THR87J, THR92J, TRP18C, TRP22C, TYR23C, TYR29C, VAL64C, VAL66C, VAL94J, VAL99C
• C-N: ALA24C, ALA48N, ALA59N, ARG11C, ARG16C, ARG21C, ARG23N, ARG26N, ARG30C, ARG35N, ARG38C, ARG40C, ARG45N, ARG57N, ARG59C, ASP36C, CYS24N, CYS43N, GLN28C, GLN37C, GLN52N, GLU19C, GLU35C, GLU44C, GLU46N, GLY13C, GLY185C, GLY25C, GLY2C, GLY38N, GLY41C, GLY51N, GLY55N, GLY9C, HIS31C, HIS49N, HIS6C, ILE14C, ILE57C, ILE5C, ILE8C, LEU12C, LEU32C, LEU33C, LEU34C, LEU39N, LEU47N, LEU53N, LYS199C, LYS26C, LYS27C, LYS45C, LYS4C, LYS50N, LYS58N, PHE10C, PHE186C, PHE36N, PHE37N, PRO54N, PRO7C, SER20C, SER60N, THR15C, THR22N, TRP18C, TRP22C, TYR184C, TYR201C, TYR23C, TYR29C, TYR34N, VAL25N, VAL55C, VAL56N
• D-E: ALA102E, ALA104E, ALA108E, ALA94E, ALA95E, ARG107E, ARG126E, ARG191D, ARG209D, ARG37E, ARG49D, ARG50D, ARG57D, ASN199D, ASP117E, ASP53D, GLN201D, GLU111E, GLU122E, GLU205D, GLU8E, GLY103E, GLY114E, GLY87D, GLY90D, GLY97E, GLY99E, ILE101E, ILE118E, ILE11E, ILE13E, ILE204D, LEU119E, LEU202D, LYS121E, LYS85D, LYS86D, LYS9E, MET10E, PHE206D, PRO52E, PRO96E, SER208D, SER91D, THR116E, THR89D, THR98E, VAL100E, VAL115E, VAL32E, VAL51E, VAL55E, VAL56D, VAL88D
• D-P: ARG131D, ARG42P, THR44P
• E-H: ALA138E, ALA146E, ALA40H, ARG104H, ARG105H, ARG122H, ARG140E, ARG143E, ARG150E, ARG152E, ARG41H, ARG64E, ARG68H, ARG69H, ARG84H, ASP121H, ASP147E, GLN141E, GLN72E, GLN78H, GLU123H, GLU136H, GLU137E, GLU149E, GLU42H, GLU68E, GLU77H, GLU79E, GLU81E, GLY106H, GLY108H, GLY154E, GLY43H, GLY66H, HIS78E, HIS81H, HIS82H, ILE109H, ILE45H, ILE76E, ILE80E, ILE80H, LEU107H, LEU139E, LEU142E, LEU151E, LYS145E, LYS153E, LYS64H, LYS92E, PHE44H, PRO67H, PRO72H, PRO77E, PRO93E, PRO96E, THR144E, THR75E, TRP138H, TYR65H, VAL103H, VAL137H, VAL148E, VAL79H, VAL82E
• F-O: ARG2F, ASN73F, GLN94F, GLU41O, GLU69F, LYS44O, MET1F, PRO2O
• F-R: ALA101F, ALA24R, ALA49F, ALA73R, ALA99F, ARG32R, ARG35R, ARG46F, ARG47F, ARG64R, ARG72R, ARG74R, ARG80F, ARG86F, ARG87F, ASN100F, ASN36R, ASN7F, ASP30R, ASP33R, GLN63R, GLU28R, GLU41F, GLU42F, GLU5F, GLU62R, GLY27R, GLY44F, GLY77R, ILE52F, ILE65R, ILE75R, ILE8F, LEU26R, LEU31R, LEU40R, LEU43F, LEU45F, LEU48F, LEU58R, LEU66R, LEU76R, LEU78R, LEU79R, LEU98F, LYS23R, LYS41R, LYS61R, LYS84R, MET89F, PHE29R, PHE60F, PHE81R, PHE97F, PRO51F, PRO80R, PRO96F, SER93F, THR69R, THR82R, TRP62F, TYR34R, TYR50F, VAL37R, VAL39R, VAL6F, VAL88F, VAL91F, VAL9F
• G-I: ALA40G, ALA45I, ARG107I, ARG10G, ARG121I, ARG41G, ARG42I, ASN37G, ASP105I, ASP15G, ASP33G, GLN13G, GLU48I, GLY34G, GLY39I, LEU16G, LEU40I, LYS118I, LYS36G, PHE101I, PRO14G, SER71I, THR24G, TYR44G, VAL17G, VAL41I, VAL44I
• G-K: ALA145G, ALA147G, ALA150G, ALA152G, ALA60K, ARG149G, ARG155G, ARG54K, ARG96K, ASN148G, GLN62K, GLN93K, GLU146G, GLU92K, GLY56K, GLY90K, HIS153G, LEU63K, LEU66K, MET73G, PRO58K, SER53K, THR57K, TYR151G, TYR154G, TYR50K, TYR59K, TYR85G
• G-a: GLY82G, LYS90a
• H-L: ARG91H, ASN8L, GLY90H, ILE7L, LEU10L, PRO89H
• H-Q: ARG91H, ARG92H, GLY33Q, GLY90H, LEU31Q, LYS34Q, TYR32Q, TYR94H
• I-J: ARG111I, ARG60J, ASP58J, GLU61J, GLY115I, HIS62J, LYS113I, LYS57J, THR48J, TYR114I
• I-M: ARG125M, ARG128I, LYS126M, LYS127I, SER126I, TYR125I
• I-N: ALA59N, ARG111I, GLU110I, LYS112I, LYS113I, SER60N, TRP61N, TYR114I
• I-a: ARG128I, ASN35a, ASN54a, ASN57a, GLY58a, HIS32a, HIS37a, ILE34a, ILE53a, LEU33a, LEU60a, LEU80a, LEU84a, LEU87a, LYS127I, PRO36a, PRO56a, SER126I, THR1a, THR31a, THR52a, THR55a, TYR125I, VAL59a, VAL61a
• J-N: ALA48N, ALA59N, ARG29N, ARG41N, ARG45J, ARG45N, ARG46J, ARG51J, ARG57N, ARG60J, ARG66J, ASP12J, CYS40N, CYS43N, GLN52N, GLU46N, GLU61J, GLU64J, GLY10J, GLY51N, GLY52J, GLY55N, GLY93J, HIS49N, HIS62J, ILE42N, ILE50J, LEU16J, LEU44N, LEU47N, LEU53N, LEU65J, LYS50N, LYS57J, LYS58N, PHE11J, PHE36N, PHE37N, PHE47J, PHE54J, PHE63J, PRO53J, PRO54N, SER32N, SER59J, SER60N, THR48J, THR67J, TRP61N, TYR34N, VAL44J, VAL49J, VAL56N
• K-R: ARG74R, ARG87R, ASP110K, ASP111K, GLU83R, HIS116K, ILE108K, ILE83K, LEU85R, LYS49R, LYS84R, LYS88R, PHE81R, PRO113K, PRO115K, SER107K, THR112K, THR47R, THR82R, THR87K, VAL109K, VAL114K, VAL84K, VAL86R
• L-Q: ARG12L, ARG15L, ARG38Q, ASN8L, GLN9L, GLY14L, GLY33Q, HIS29Q, ILE36Q, ILE7L, LEU10L, LEU31Q, LYS13L, LYS34Q, LYS37Q, PHE27Q, PRO28Q, PRO30Q, PRO5L, THR6L, TYR32Q, VAL11L, VAL35Q
• L-a: GLN45a, LYS47L
• M-S: ALA75S, ARG102M, ARG104M, ARG36S, ARG3S, ARG78S, ARG80M, ARG81S, ARG88M, ARG91M, ARG93M, ARG94M, ARG99M, ASN65S, CYS86M, GLN101M, GLU64S, GLU73S, GLY100M, GLY72S, GLY85M, GLY89M, HIS92M, ILE84M, LEU71S, LEU81M, LEU90M, LEU96M, LYS111M, LYS120M, MET66S, PHE74S, PRO2S, PRO76S, PRO97M, THR103M, THR105M, THR77S, TYR80S, TYR87M, VAL67S, VAL98M
• M-a: ALA118M, ALA123M, ALA20a, ARG125M, ARG16a, ASN35a, ASN3a, ASN54a, GLN8a, GLU10a, GLY119M, HIS37a, ILE11a, ILE15a, ILE34a, ILE38a, ILE39a, ILE4a, ILE53a, ILE73a, LEU23a, LEU33a, LEU40a, LYS120M, LYS121M, LYS122M, LYS126M, LYS7a, MET2a, MET69a, MET9a, PRO124M, PRO36a, SER6a, THR12a, THR1a, THR52a, THR5a, VAL19a
• N-S: ARG37S, ASP13S, HIS14S, LYS15N, PHE10S, PHE16N, VAL18N
• O-Q: ARG64O, ARG68O, ARG72O, ARG81Q, ARG88O, ASP83Q, GLN71O, GLU24Q, GLU73O, GLU86Q, ILE90Q, LEU67O, LEU84Q, LYS104Q, LYS87Q, MET82Q, VAL60O, VAL85Q