1UTF
the structure of the trp rna-binding attenuation protein (trap) bound to a rna molecule containing uagau repeats (part i)
Total interactions analyzed 528
Total true interactions 77
Strongest Interaction Chains I-J
Int. Res. 95
Norm. En. per Res. -5.6596
Hub Node A(7)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -119.7717 -66.1474 -327.19 -513.1091 95 11 10 12877 2 32 37
A-C 0.0 0.0 -0.2052 -0.2052 4 0 0 37 0 1 2
A-J 0.0 0.0 -0.1983 -0.1983 6 0 0 40 0 0 2
A-K -119.7708 -57.3959 -316.644 -493.8107 94 14 10 12459 2 29 34
A-L 0.0 -4.5212 -0.8965 -5.4177 6 0 0 115 0 8 1
A-U 0.0 0.0 -1.9379 -1.9379 6 0 0 122 0 2 1
A-V 0.0 12.391 -27.0068 -14.6158 21 0 0 1356 2 11 12
B-C -130.8138 -60.2399 -324.304 -515.3577 92 15 10 12640 3 29 34
B-D 0.0 0.0 -0.181 -0.181 4 0 0 37 0 0 2
B-K 0.0 0.0 -0.1892 -0.1892 7 0 0 37 0 0 2
B-L -15.2438 2.241 -24.1456 -37.1484 21 1 0 1288 1 11 12
B-M 0.0 -4.6703 -1.3747 -6.0451 8 0 0 151 0 8 1
B-V 0.0 0.0 -1.8678 -1.8678 6 0 0 113 0 2 1
C-D -104.6517 -59.4108 -327.215 -491.2775 93 14 10 12693 2 30 35
C-E 0.0 0.0 -0.1982 -0.1982 4 0 0 37 0 0 2
C-L 0.0 0.0 -2.2587 -2.2587 6 0 0 117 0 2 1
C-M -12.0461 3.5959 -25.6945 -34.1447 21 1 0 1345 2 13 13
C-N 0.0 -4.9642 -1.2313 -6.1955 7 0 0 141 0 8 1
D-E -124.7182 -64.0338 -320.84 -509.592 92 14 10 12601 3 29 34
D-F 0.0 0.0 -0.2122 -0.2122 6 0 0 39 0 0 2
D-M 0.0 0.0 -2.1833 -2.1833 6 0 0 116 0 2 1
D-N -2.3952 7.0689 -28.9369 -24.2632 22 2 0 1474 2 12 13
D-O 0.0 -5.0011 -1.0151 -6.0163 6 0 0 123 0 8 1
E-F -122.7009 -48.2061 -326.039 -496.946 92 19 10 12749 2 29 35
E-G 0.0 0.0 -0.183 -0.183 5 0 0 38 0 0 2
E-N 0.0 0.0 -2.2108 -2.2108 6 0 0 115 0 2 1
E-O 0.0 10.0611 -27.2054 -17.1443 21 1 0 1371 2 13 14
E-P 0.0 -5.1164 -1.2756 -6.3919 7 0 0 146 0 8 1
F-G -113.9618 -56.0556 -329.464 -499.4814 94 15 10 12615 2 30 34
F-H 0.0 0.0 -0.2142 -0.2142 4 0 0 40 0 0 2
F-O 0.0 0.0 -2.4884 -2.4884 7 0 0 118 0 2 1
F-P 0.0 8.4792 -29.2575 -20.7783 21 1 0 1478 1 11 13
F-Q 0.0 -3.3616 -1.1216 -4.4832 7 0 0 133 0 8 1
G-H -119.3612 -59.5424 -319.332 -498.2356 93 19 10 12596 3 29 34
G-I 0.0 0.0 -0.2216 -0.2216 8 0 0 44 0 0 2
G-P 0.0 0.0 -2.5711 -2.5711 6 0 0 137 0 2 1
G-Q -3.6023 16.3153 -26.3903 -13.6774 23 3 0 1466 2 12 13
G-R 0.0 -4.8526 -1.2584 -6.111 8 0 0 145 0 8 1
H-I -110.6074 -57.1542 -329.004 -496.7655 94 15 10 12682 3 28 35
H-J 0.0 0.0 -0.2685 -0.2685 5 0 0 48 0 1 2
H-Q 0.0 0.0 -2.5835 -2.5835 6 0 0 139 0 2 1
H-R -9.369 6.6142 -28.9669 -31.7217 21 1 0 1400 1 11 13
H-S 0.0 0.0 -1.3443 -1.3443 7 0 0 145 0 8 1
I-J -152.8015 -57.5498 -327.309 -537.6603 95 19 9 12731 2 30 35
I-K 0.0 0.0 -0.227 -0.227 9 0 0 48 0 0 2
I-R 0.0 0.0 -2.3161 -2.3161 6 0 0 114 0 2 1
I-S -3.9126 8.1396 -24.4249 -20.1979 22 2 0 1332 1 12 13
I-T 0.0 -4.7068 -1.3333 -6.0401 6 0 0 143 0 8 1
J-K -109.963 -47.8138 -339.816 -497.5928 95 20 9 13060 3 34 38
J-S 0.0 0.0 -2.2745 -2.2745 6 0 0 125 0 2 1
J-T -3.9766 6.1399 -25.1504 -22.9872 21 3 0 1410 3 11 13
J-U 0.0 -5.4515 -1.1456 -6.5971 7 0 0 130 0 8 1
K-T 0.0 0.0 -2.4961 -2.4961 6 0 0 128 0 2 1
K-U -6.4975 8.0684 -28.3442 -26.7733 21 1 0 1362 1 12 13
K-V 0.0 -4.835 -1.4815 -6.3165 7 0 0 148 0 8 1
L-M -127.7139 -80.9829 -333.834 -542.5308 97 15 10 13067 6 32 37
L-N 0.0 0.0 -0.1985 -0.1985 7 0 0 37 0 0 2
L-U 0.0 0.0 -0.193 -0.193 4 0 0 40 0 0 2
L-V -119.2514 -56.1306 -318.843 -494.225 95 11 9 12683 2 30 34
M-N -110.5896 -59.0437 -335.145 -504.7783 93 14 10 12853 3 29 34
M-O 0.0 0.0 -0.1744 -0.1744 7 0 0 37 0 0 2
M-V 0.0 0.0 -0.2021 -0.2021 7 0 0 42 0 0 2
N-O -104.4559 -60.2087 -336.782 -501.4466 96 17 9 13221 5 34 36
N-P 0.0 0.0 -0.2483 -0.2483 8 0 0 68 0 0 2
O-P -120.3605 -47.3723 -327.714 -495.4467 94 14 9 12687 3 29 34
O-Q 0.0 0.0 -0.1964 -0.1964 6 0 0 42 0 0 2
P-Q -124.3398 -63.8295 -330.28 -518.4493 93 13 9 12670 3 30 35
P-R 0.0 0.0 -0.1815 -0.1815 6 0 0 40 0 0 2
Q-R -125.816 -49.1848 -330.696 -505.6967 96 17 9 12768 3 30 34
Q-S 0.0 0.0 -0.2176 -0.2176 4 0 0 42 0 0 2
R-S -125.6795 -45.2285 -318.508 -489.416 95 12 9 12506 3 30 35
R-T 0.0 0.0 -0.1595 -0.1595 6 0 0 34 0 0 2
S-T -127.3149 -60.1377 -321.166 -508.6186 95 15 10 12580 4 29 34
S-U 0.0 0.0 -0.2004 -0.2004 4 0 0 41 0 0 2
T-U -134.6641 -49.2749 -331.456 -515.395 93 18 9 12845 4 30 35
T-V 0.0 0.0 -0.1623 -0.1623 6 0 0 34 0 0 2
U-V -122.5314 -53.2765 -331.241 -507.0489 93 12 10 12800 2 29 34