1UTD
the structure of the trp ran-binding attenuation protein (trap) bound to a 63-nucleotide rna molecule containing gaguuu repeats
Total interactions analyzed 528
Total true interactions 77
Strongest Interaction Chains L-M
Int. Res. 94
Norm. En. per Res. -5.838
Hub Node A(7)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -143.6203 -56.6093 -333.368 -533.5977 99 15 9 13131 5 34 37
A-C 0.0 0.0 -0.176 -0.176 8 0 0 33 0 0 2
A-J 0.0 0.0 -0.1854 -0.1854 4 0 0 37 0 0 2
A-K -138.3972 -67.3076 -318.532 -524.2369 95 14 9 12697 3 30 35
A-L 0.0 0.0 -1.8607 -1.8607 8 0 0 149 0 8 1
A-M -16.1971 0.2537 -32.7742 -48.7175 21 4 0 1362 1 12 13
A-N 0.0 0.0 -1.8608 -1.8608 7 0 0 106 0 2 1
B-C -141.1266 -55.8719 -307.192 -504.1905 95 14 9 12573 3 31 35
B-D 0.0 0.0 -0.1874 -0.1874 4 0 0 37 0 0 2
B-K 0.0 0.0 -0.1953 -0.1953 8 0 0 46 0 0 2
B-M 0.0 0.0 -1.052 -1.052 7 0 0 130 0 8 1
B-N -7.7178 6.3965 -29.6519 -30.9732 22 1 0 1372 2 12 13
B-O 0.0 0.0 -2.1106 -2.1106 6 0 0 121 0 2 1
C-D -119.4151 -60.6155 -321.877 -501.9076 95 13 10 12728 3 35 37
C-E 0.0 0.0 -0.2118 -0.2118 8 0 0 57 0 0 2
C-N 0.0 0.0 -1.0249 -1.0249 7 0 0 124 0 7 1
C-O -5.8265 4.9695 -27.496 -28.3529 22 1 0 1323 1 11 13
C-P 0.0 0.0 -1.9047 -1.9047 6 0 0 114 0 2 1
D-E -121.2373 -55.5235 -336.661 -513.4218 94 14 9 12885 3 30 35
D-F 0.0 0.0 -0.1596 -0.1596 7 0 0 31 0 0 2
D-O 0.0 0.0 -1.3156 -1.3156 6 0 0 148 0 8 1
D-P -2.9664 10.2944 -28.2171 -20.8891 21 2 0 1384 2 12 13
D-Q 0.0 0.0 -2.3264 -2.3264 8 0 0 126 0 2 1
E-F -123.1872 -67.1178 -320.921 -511.226 94 13 9 12514 4 29 34
E-G 0.0 0.0 -0.1651 -0.1651 4 0 0 30 0 0 2
E-P 0.0 0.0 -0.9357 -0.9357 6 0 0 115 0 8 1
E-Q -8.6144 6.0343 -29.8042 -32.3843 24 2 0 1418 2 11 13
E-R 0.0 0.0 -2.7653 -2.7653 8 0 0 128 0 2 1
F-G -139.4501 -62.5678 -319.336 -521.3539 95 13 10 12564 3 31 34
F-H 0.0 0.0 -0.2046 -0.2046 4 0 0 35 0 0 2
F-Q 0.0 0.0 -0.9527 -0.9527 8 0 0 123 0 7 1
F-R -5.3927 10.1514 -29.337 -24.5782 22 2 0 1415 2 11 13
F-S 0.0 0.0 -1.7953 -1.7953 8 0 0 105 0 2 1
G-H -143.4983 -38.9556 -324.118 -506.5719 97 16 10 12748 2 33 36
G-I 0.0 0.0 -0.2143 -0.2143 8 0 0 49 0 0 2
G-R 0.0 0.0 -0.8978 -0.8978 7 0 0 110 0 8 1
G-S -6.9585 11.2216 -28.5639 -24.3007 22 2 0 1345 2 11 13
G-T 0.0 0.0 -1.958 -1.958 6 0 0 106 0 2 1
H-I -137.7724 -60.9525 -315.707 -514.4319 94 16 9 12800 4 30 34
H-J 0.0 0.0 -0.2796 -0.2796 6 0 0 63 0 0 2
H-S 0.0 -3.2678 -0.9526 -4.2204 7 0 0 126 0 8 1
H-T -2.9099 9.2031 -27.6281 -21.3348 22 1 0 1343 2 12 14
H-U 0.0 0.0 -2.3807 -2.3807 7 0 0 115 0 2 1
I-J -86.8669 -33.3693 -321.924 -442.1602 95 9 10 12692 2 35 36
I-K 0.0 0.0 -0.1456 -0.1456 4 0 0 26 0 0 2
I-T 0.0 0.0 -1.2003 -1.2003 6 0 0 141 0 8 1
I-U -5.1442 2.2157 -29.6185 -32.5469 23 3 0 1401 1 11 13
I-V 0.0 0.0 -2.6481 -2.6481 7 0 0 118 0 2 1
J-K -119.6129 -69.3239 -326.002 -514.9388 93 13 10 12467 3 31 34
J-L 0.0 0.0 -2.1648 -2.1648 6 0 0 104 0 2 0
J-U 0.0 -4.5945 -1.1251 -5.7197 7 0 0 133 0 8 1
J-V -3.0144 3.9415 -25.954 -25.0269 22 2 0 1365 1 12 14
K-L -12.2355 4.1585 -30.9642 -39.0412 23 1 0 1314 1 11 13
K-M 0.0 0.0 -2.3809 -2.3809 6 0 0 109 0 2 1
K-V 0.0 0.0 -2.4161 -2.4161 8 0 0 179 0 8 1
L-M -149.282 -75.8634 -323.627 -548.7724 94 17 10 12520 4 28 35
L-N 0.0 0.0 -0.199 -0.199 4 0 0 37 0 1 2
L-U 0.0 0.0 -0.2315 -0.2315 5 0 0 42 0 1 2
L-V -145.8498 -62.0491 -320.818 -528.7169 95 16 9 12592 2 33 39
M-N -132.2093 -61.3614 -311.821 -505.3917 95 13 9 12620 3 28 34
M-O 0.0 0.0 -0.212 -0.212 5 0 0 43 0 1 2
M-V 0.0 0.0 -0.2006 -0.2006 7 0 0 40 0 0 2
N-O -122.3655 -61.7791 -322.243 -506.3876 96 14 10 12664 3 33 37
N-P 0.0 0.0 -0.1971 -0.1971 5 0 0 37 0 1 2
O-P -116.6189 -61.5586 -332.73 -510.9075 94 15 10 12786 3 29 35
O-Q 0.0 0.0 -0.2063 -0.2063 5 0 0 38 0 1 2
P-Q -128.5136 -58.2463 -332.962 -519.7219 96 15 9 12893 3 33 39
P-R 0.0 0.0 -0.1895 -0.1895 6 0 0 39 0 0 2
Q-R -127.6233 -59.8527 -335.071 -522.547 95 13 9 12791 3 32 38
Q-S 0.0 0.0 -0.2033 -0.2033 4 0 0 38 0 1 2
R-S -126.7626 -54.8348 -317.432 -499.0294 94 12 9 12418 2 28 35
R-T 0.0 0.0 -0.2252 -0.2252 6 0 0 44 0 0 2
S-T -127.4319 -61.9387 -314.757 -504.1276 92 12 9 12369 3 29 34
S-U 0.0 0.0 -0.1964 -0.1964 4 0 0 37 0 1 2
T-U -113.9207 -55.6171 -315.259 -484.7968 93 13 9 12414 3 28 35
T-V 0.0 0.0 -0.2222 -0.2222 8 0 0 47 0 0 2
U-V -134.8181 -54.9031 -327.677 -517.3982 95 18 9 12597 3 28 36