1UF2
the atomic structure of rice dwarf virus (rdv)
Total interactions analyzed 120
Total true interactions 42
Strongest Interaction Chains B-E
Int. Res. 41
Norm. En. per Res. -3.2239
Hub Node A(10)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -124.1107 -132.1293 -808.595 -1064.8351 339 35 17 34621 14 80 69
A-P 0.0 0.0 -33.602 -33.602 26 0 0 1497 0 0 0
A-C 0.0 0.0 -23.0861 -23.0861 34 0 0 1383 0 0 1
A-D -38.0765 0.0 -83.503 -121.5795 56 6 1 3438 0 2 2
A-Q 0.0 0.0 -25.1229 -25.1229 42 0 0 1772 0 3 8
A-E -46.5886 -21.7006 -134.598 -202.8871 89 10 4 5318 4 13 8
A-S 0.0 -2.3726 -132.827 -135.1996 100 4 4 6858 0 7 11
A-I 0.0 0.0 -55.5512 -55.5512 49 0 2 2802 0 1 3
A-J 0.0 6.5682 2 ARG866A, LYS92J
A-K -44.7286 -1.9998 8 ASP294K, GLU296K, HIS314A, LEU313A, LEU315A, LYS295K, MET317A, PHE292K
B-D -7.2867 11.4399 -67.4939 -63.3407 43 3 0 2793 0 5 4
B-Q 0.0 0.0 -79.3773 -79.3773 45 5 1 3361 0 1 3
B-E -48.951 0.0 -83.2275 -132.1785 41 6 1 3154 0 0 4
B-F 0.0 9.8936 -84.5339 -74.6403 88 7 0 4835 0 8 11
B-R -10.9782 -0.3477 -137.303 -148.6289 86 7 2 6191 0 7 11
B-G -7.836 -11.9805 -32.9131 -52.7296 47 3 1 1938 0 9 3
B-H -20.6237 -36.0329 -153.1 -209.7566 125 2 9 7396 4 14 12
B-T 0.0 -5.9198 2 ARG105T, GLU971B
P-C -81.0318 -74.6655 -657.13 -812.8273 253 42 14 28886 11 53 55
P-D -84.1335 -16.0109 -682.187 -782.3315 254 40 16 29062 10 53 54
C-D -86.9349 -30.1184 -669.694 -786.7473 253 36 14 29392 8 54 53
C-Q -6.6988 -10.564 -63.413 -80.6759 81 7 0 3909 1 27 9
C-F 0.0 0.0 -53.8022 -53.8022 91 14 3 3913 0 1 1
D-Q 0.0 0.0 -10.7108 -10.7108 14 1 0 553 0 0 4
D-F 0.0 -7.3655 -57.6473 -65.0127 77 2 0 3295 1 27 8
Q-E -96.9453 -37.2752 -664.372 -798.5925 255 42 12 29380 11 53 54
Q-F -90.7251 -45.0786 -666.911 -802.7146 264 56 13 30113 9 54 53
Q-S -2.5369 -18.2509 -87.5188 -108.3066 80 3 0 4254 1 26 9
Q-J -4.6709 0.0 2 ASN277J, GLY276Q
E-F -77.4752 -40.6157 -667.348 -785.4389 253 48 13 29629 11 53 53
E-G -17.2523 -3.0949 -60.4068 -80.7541 69 5 0 3219 2 18 15
E-S 0.0 0.0 -9.7437 -9.7437 14 6 0 620 0 2 5
E-J -2.1098 -17.4037 9 ARG303J, ARG337E, ARG402J, ASN421E, ASP347E, ASP76E, ASP90J, GLN118J, LYS398J
F-R -25.8972 -11.1626 -69.5084 -106.5682 73 5 0 3653 3 22 15
F-G 0.0 1.0692 -9.1561 -8.0869 22 0 0 754 0 4 6
R-G -80.5421 -32.9058 -673.037 -786.4849 252 48 13 29566 11 53 53
R-H -75.8955 -18.1746 -688.279 -782.3491 255 43 15 29874 9 53 52
G-H -73.5119 -35.4808 -677.684 -786.6767 254 43 16 29698 10 54 52
H-T -12.194 -15.4654 11 ARG303T, ARG337H, ARG402T, ASN421H, ASP347H, ASP76H, ASP90T, GLN118T, GLN341H, GLY142T, LYS398T
S-I -77.0146 -41.6638 -444.827 -563.5054 191 24 12 19308 8 36 34
S-J -71.8572 -26.3321 38 ARG107J, ARG158S, ARG189S, ARG190J, ARG22J, ARG22S, ARG268J, ARG337S, ARG378S, ARG384S, ASN120J, ASN166S, ASN229J, ASN24S, ASP257J, ASP266J, ASP26S, ASP321S, ASP322S, ASP324S, ASP327S, ASP35J, ASP35S, GLN109J, GLN125J, GLU14J, GLU188S, GLU18J, GLU294J, GLU296J, ILE167S, ILE235S, LYS129S, LYS131J, LYS155S, SER29S, THR256J, THR27S
I-J -90.0799 -39.6825 40 ALA243I, ARG107I, ARG158J, ARG189J, ARG190I, ARG191I, ARG22I, ARG22J, ARG268I, ARG378J, ARG384J, ARG58J, ASN166J, ASN229I, ASP257I, ASP266I, ASP26J, ASP321J, ASP322J, ASP324J, ASP327J, ASP35I, ASP35J, GLN118I, GLN125I, GLU14I, GLU188J, GLU18I, GLU294I, GLU296I, GLY171J, ILE167J, ILE235J, LYS129J, LYS131I, LYS155J, PHE232J, SER29J, SER319J, TYR19I