1TU4

crystal structure of rab5-gdp complex

• Total interactions analyzed: 6
• Total true interactions: 5
• Strongest Interaction:
  • Chains: C-D
  • Int. Res.: 60
  • Norm. En. per Res.: -2.8934
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-25.5455	13.7475	-155.784	-167.5819	62	11	3	6316	2	13	16
A-D	0.0	-2.0738	-74.6612	-76.735	49	6	2	3713	0	7	6
B-C	-15.0318	-1.869	-33.0172	-49.918	31	1	2	1752	0	3	1
B-D	0.0	1.0244	-60.3521	-59.3277	48	2	0	2890	0	6	8
C-D	-30.766	6.9763	-149.813	-173.6027	60	11	3	6006	3	14	17

Interface residues

• A-B: ALA55A, ALA56A, ALA77A, ALA86A, ALA86B, ARG110B, ARG120A, ARG120B, ARG81A, ARG81B, ARG91A, ARG91B, ASN113B, GLN119B, GLN121A, GLN121B, GLN79A, GLN79B, GLU117A, GLU117B, GLU28B, GLU80A, GLU80B, GLY27B, GLY54A, GLY54B, GLY78A, GLY92B, HIS83A, HIS83B, ILE53A, ILE53B, LEU118B, LEU26B, LEU58A, LEU85A, LEU85B, LYS112B, LYS116B, LYS22B, PHE57A, PRO87A, PRO87B, SER29A, SER51A, SER51B, SER84A, SER84B, THR52A, THR52B, THR76A, TRP114A, TRP114B, TRP74A, TRP74B, TYR82A, TYR82B, TYR89A, TYR89B, TYR90A, TYR90B, VAL115B
• A-D: ALA30A, ALA55A, ALA56A, ALA77A, ARG81A, ASN16D, ASP75A, CYS19D, CYS63D, GLN20D, GLN44D, GLN49A, GLN60D, GLN79A, GLU47A, GLU47D, GLU50A, GLU72D, GLU80A, GLY43D, GLY54A, GLY78A, HIS46D, ILE18D, ILE53A, LEU38A, LEU58A, LYS17D, LYS33A, LYS42D, LYS70A, LYS70D, PHE48A, PHE57A, PHE57D, PHE71D, SER29A, SER34A, SER51A, THR52A, THR59A, THR59D, THR61D, THR68D, THR76A, TYR82A, VAL41D, VAL62D, VAL69D
• B-C: ALA55C, ALA56C, ALA77C, CYS19B, GLN20B, GLN44B, GLN49C, GLN60B, GLN79C, GLU47C, GLU50C, GLU72B, GLY54C, GLY78C, ILE18B, ILE53C, LEU58C, LYS42B, LYS70B, PHE45B, PHE48C, PHE57B, PHE57C, SER51C, THR52C, THR59B, THR61B, THR68B, THR76C, VAL41B, VAL62B
• B-D: ALA122B, ALA122D, ALA93B, ALA93D, ARG120B, ARG120D, ARG91B, ARG91D, ASN125B, ASN125D, ASN16D, CYS19B, CYS19D, GLN119B, GLN121B, GLN121D, GLN20B, GLN20D, GLN94B, GLN94D, GLU72B, GLU72D, GLY92B, GLY92D, ILE18B, ILE18D, LEU181D, LYS17D, LYS22B, LYS22D, LYS70B, LYS70D, PHE21B, PHE21D, PRO124B, PRO124D, PRO182B, PRO182D, PRO87B, PRO87D, SER123B, SER123D, THR67D, THR68B, THR68D, TYR89B, TYR90B, TYR90D
• C-D: ALA55C, ALA56C, ALA77C, ALA86C, ALA86D, ARG110D, ARG120D, ARG81C, ARG81D, ARG91C, ARG91D, ASN113D, GLN119D, GLN121C, GLN121D, GLN79C, GLN79D, GLU117C, GLU117D, GLU28D, GLU80C, GLU80D, GLY27D, GLY54C, GLY54D, GLY78C, GLY92D, HIS83C, HIS83D, ILE53C, ILE53D, LEU118D, LEU26D, LEU58C, LEU85C, LEU85D, LYS112D, LYS116D, LYS22D, PHE57C, PRO87C, PRO87D, SER29C, SER51C, SER84C, SER84D, THR52C, THR52D, THR76C, TRP114C, TRP114D, TRP74C, TRP74D, TYR82C, TYR82D, TYR89C, TYR89D, TYR90C, TYR90D, VAL115D