1TD0

viral capsid protein shp at ph 5.5

• Total interactions analyzed: 6
• Total true interactions: 3
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 76
  • Norm. En. per Res.: -1.465
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-8.8385	0.0	-102.502	-111.3405	76	14	16	6658	0	14	11
A-C	0.0	11.4395	-17.7341	-6.2946	23	0	1	996	0	14	12
C-D	-6.0585	0.0	-96.6006	-102.6591	73	13	16	6317	0	10	9

Interface residues

• A-B: ALA21A, ALA221B, ALA224B, ALA236B, ALA24A, ALA284B, ALA287B, ALA36A, ALA84A, ALA87A, ARG13A, ARG213B, ASN18A, ASN218B, ASP19A, ASP219B, GLU11A, GLU211B, GLU269B, GLU272B, GLU286B, GLU69A, GLU72A, GLU86A, GLY17A, GLY217B, GLY281B, GLY81A, HIS222B, HIS22A, HIS289B, HIS89A, ILE14A, ILE214B, ILE288B, ILE88A, LEU237B, LEU264B, LEU266B, LEU268B, LEU37A, LEU64A, LEU66A, LEU68A, LYS279B, LYS299B, LYS79A, LYS99A, PHE15A, PHE215B, PHE283B, PHE83A, PRO20A, PRO220B, PRO235B, PRO267B, PRO35A, PRO67A, SER280B, SER80A, THR223B, THR23A, THR276B, THR285B, THR76A, THR85A, TRP290B, TRP90A, TYR277B, TYR278B, TYR77A, TYR78A, VAL12A, VAL212B, VAL265B, VAL65A
• A-C: ALA45A, ASP43A, ASP453C, ASP495C, ASP53A, GLN455C, GLN55A, GLU44A, GLU492C, GLY29A, GLY454C, GLY47A, HIS497C, ILE30A, LYS456C, LYS48A, LYS498C, PRO491C, SER31A, SER493C, THR46A, VAL494C, VAL50A
• C-D: ALA421C, ALA424C, ALA436C, ALA484C, ALA487C, ALA621D, ALA624D, ALA636D, ALA684D, ALA687D, ARG413C, ARG613D, ASN418C, ASN618D, ASP419C, ASP619D, GLU469C, GLU472C, GLU486C, GLU611D, GLU669D, GLU672D, GLU686D, GLY417C, GLY481C, GLY617D, GLY681D, HIS422C, HIS489C, HIS622D, HIS689D, ILE414C, ILE488C, ILE614D, ILE688D, LEU437C, LEU464C, LEU466C, LEU468C, LEU637D, LEU664D, LEU666D, LEU668D, LYS479C, LYS499C, LYS679D, PHE415C, PHE483C, PHE615D, PHE683D, PRO420C, PRO435C, PRO467C, PRO620D, PRO635D, PRO667D, SER480C, SER680D, THR423C, THR476C, THR485C, THR623D, THR676D, THR685D, TRP490C, TYR477C, TYR478C, TYR677D, TYR678D, VAL412C, VAL465C, VAL612D, VAL665D