1T6V

crystal structure analysis of the nurse shark new antigen receptor (nar) variable domain in complex with lysozyme

• Total interactions analyzed: 6
• Total true interactions: 5
• Strongest Interaction:
  • Chains: L-N
  • Int. Res.: 78
  • Norm. En. per Res.: -4.5843
• Hub Node: L(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
L-N	-48.6005	-82.2088	-226.767	-357.5763	78	13	5	8586	7	11	10
L-M	0.0	6.0633	-60.9652	-54.9019	38	2	0	2606	0	9	13
N-M	-6.6514	-22.1907	-12.5961	-41.4382	32	0	0	1217	2	17	14
N-O	-8.2255	0.0	-28.3836	-36.6091	22	3	0	914	0	4	2
M-O	-43.3636	-69.785	-203.332	-316.4806	78	12	4	7669	6	10	12

Interface residues

• L-N: ALA102N, ALA107L, ALA110L, ALA27N, ALA30N, ALA88N, ALA95L, ALA95N, ARG100N, ARG112L, ARG21L, ARG61L, ARG73L, ASN103L, ASN106L, ASN44L, ASN46L, ASN59L, ASN74L, ASN77L, ASP101L, ASP26N, ASP48L, ASP52L, ASP93N, CYS35N, CYS76L, CYS92N, CYS97N, GLN57L, GLU103N, GLU35L, GLY102L, GLY104L, GLY22L, GLY32N, GLY71L, GLY84N, GLY86N, GLY89N, GLY90N, ILE58L, ILE98L, LEU24N, LEU31N, LEU56L, LEU75L, LEU85N, LEU96N, LYS116L, LYS96L, LYS97L, MET105L, SER100L, SER28N, SER33N, SER50L, SER60L, SER72L, SER98N, SER99N, THR34N, THR47L, THR51L, TRP108L, TRP111L, TRP62L, TRP63L, TYR101N, TYR23L, TYR29N, TYR53L, TYR91N, TYR94N, VAL109L, VAL3N, VAL87N, VAL99L
• L-M: ALA10M, ALA110L, ALA11M, ALA82M, ALA90M, ARG112L, ARG114L, ARG14M, ASN106L, ASN113L, ASN93M, ASP119L, ASP48L, ASP87M, CYS115L, GLU35L, GLU7M, GLY117L, GLY16M, HIS15M, ILE88M, LYS116L, LYS13M, LYS1M, LYS96M, PHE34L, PHE3M, PRO79M, SER81M, SER85M, SER86M, THR118L, THR47L, THR89M, TRP108L, TRP111L, VAL109L, VAL92M
• N-M: ARG100N, ARG21M, ARG25N, ARG2N, ARG82N, ARG8N, ASN74M, ASN77M, ASN93M, ASP101M, ASP106N, ASP26N, ASP4N, CYS104N, CYS76M, CYS97N, GLU103N, GLY105N, GLY16M, HIS15M, ILE78M, LEU75M, LYS96M, LYS97M, PRO79M, SER100M, SER98N, THR89M, TRP63M, TYR20M, TYR94N, VAL3N
• N-O: ALA88O, ARG8N, ASN113N, ASP106N, CYS92O, GLN5N, GLU13N, GLY52O, GLY53O, GLY86O, GLY89O, GLY90O, LYS51O, SER33O, SER50O, SER9N, THR111N, THR11N, THR6N, TYR91O, VAL10N, VAL87O
• M-O: ALA102O, ALA107M, ALA110M, ALA27O, ALA30O, ALA88O, ALA95O, ARG100O, ARG112M, ARG21M, ARG25O, ARG2O, ARG45M, ARG61M, ARG73M, ASN103M, ASN106M, ASN44M, ASN46M, ASN59M, ASN77M, ASP101M, ASP26O, ASP48M, ASP52M, ASP93O, CYS35O, CYS76M, CYS92O, CYS97O, GLN57M, GLU103O, GLU35M, GLY102M, GLY104M, GLY22M, GLY32O, GLY71M, GLY86O, GLY89O, GLY90O, ILE58M, ILE98M, LEU24O, LEU31O, LEU56M, LEU75M, LEU85O, LEU96O, LYS116M, LYS96M, LYS97M, MET105M, SER100M, SER28O, SER33O, SER50M, SER60M, SER72M, SER98O, SER99O, THR34O, THR47M, THR51M, TRP108M, TRP111M, TRP62M, TRP63M, TYR101O, TYR23M, TYR29O, TYR53M, TYR91O, TYR94O, VAL109M, VAL3O, VAL87O, VAL99M