1SL0

ternary 3' complex of t7 dna polymerase with a dna primer/template containing a disordered cis-syn thymine dimer on the template and an incoming nucleotide

• Total interactions analyzed: 28
• Total true interactions: 3
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 87
  • Norm. En. per Res.: -2.7809
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-31.7664	0.0	-210.169	-241.9354	87	17	10	8823	0	10	17
A-C	-17.1512	-86.8574	-56.4921	-160.5007	69	9	0	3672	3	29	20
C-D	-39.0056	8.2113	-198.357	-229.1513	88	18	8	8942	0	12	18

Interface residues

• A-B: ALA105B, ALA29B, ALA322A, ALA324A, ALA67B, ALA87B, ALA88B, ALA93B, ARG288A, ARG318A, ARG73B, ASN106B, ASN63B, ASP316A, ASP61B, CYS275A, CYS32B, CYS35B, GLN266A, GLN98B, GLU101B, GLU30B, GLU319A, GLU330A, GLU348A, GLY262A, GLY295A, GLY33B, GLY65B, GLY71B, GLY74B, GLY92B, HIS331A, ILE289A, ILE38B, ILE60B, ILE72B, ILE75B, LEU283A, LEU78B, LEU94B, LEU99B, LYS268A, LYS285A, LYS290A, LYS344A, LYS345A, LYS36B, LYS69B, LYS90B, MET273A, MET37B, PHE102B, PHE261A, PHE274A, PHE27B, PRO267A, PRO277A, PRO287A, PRO292A, PRO325A, PRO328A, PRO34B, PRO64B, PRO68B, PRO76B, SER263A, SER95B, THR291A, THR317A, THR327A, THR66B, THR77B, THR89B, TRP264A, TRP28B, TRP31B, TYR265A, TYR286A, TYR320A, TYR326A, TYR70B, VAL294A, VAL321A, VAL329A, VAL332A, VAL91B
• A-C: ALA489A, ALA489C, ARG490A, ARG490C, ARG52A, ARG52C, ARG590C, ARG687A, ARG687C, ASN493A, ASN493C, ASN685A, ASN685C, ASP197A, ASP197C, ASP200A, ASP200C, ASP492A, ASP492C, ASP682C, GLN571A, GLN571C, GLU195A, GLU195C, GLU209A, GLU209C, GLY202A, GLY202C, GLY494A, GLY494C, GLY53A, GLY53C, HIS486A, HIS486C, HIS683A, HIS683C, ILE196A, ILE196C, ILE569A, ILE569C, LEU573C, LYS594A, PHE198A, PHE198C, PHE206A, PHE206C, PHE487A, PHE487C, PHE491A, PHE491C, PRO193A, PRO193C, PRO194A, PRO194C, SER208A, SER208C, SER568A, SER568C, THR204A, THR204C, THR205A, THR205C, THR572A, THR572C, TRP679A, TYR203A, TYR203C, VAL201A, VAL201C
• C-D: ALA105D, ALA29D, ALA322C, ALA324C, ALA67D, ALA87D, ALA88D, ALA93D, ARG288C, ARG318C, ARG73D, ASN63D, ASP316C, ASP61D, CYS275C, CYS32D, CYS35D, GLN266C, GLN62D, GLN98D, GLU30D, GLU319C, GLU330C, GLU348C, GLY262C, GLY295C, GLY33D, GLY65D, GLY71D, GLY74D, GLY92D, HIS276C, HIS331C, ILE289C, ILE38D, ILE41D, ILE60D, ILE72D, ILE75D, LEU283C, LEU78D, LEU94D, LEU99D, LYS268C, LYS285C, LYS290C, LYS344C, LYS345C, LYS36D, LYS69D, LYS90D, MET273C, MET37D, PHE102D, PHE261C, PHE274C, PHE27D, PRO267C, PRO277C, PRO287C, PRO292C, PRO325C, PRO328C, PRO34D, PRO40D, PRO64D, PRO68D, PRO76D, SER263C, SER95D, THR291C, THR317C, THR327C, THR66D, THR77D, THR89D, TRP264C, TRP28D, TRP31D, TYR265C, TYR286C, TYR320C, TYR326C, TYR70D, VAL321C, VAL329C, VAL332C, VAL91D