1RZK

hiv-1 yu2 gp120 envelope glycoprotein complexed with cd4 and induced neutralizing antibody 17b

• Total interactions analyzed: 6
• Total true interactions: 4
• Strongest Interaction:
  • Chains: G-H
  • Int. Res.: 49
  • Norm. En. per Res.: -4.2763
• Hub Node: G(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
G-C	-85.3831	-48.3383	-325.545	-459.2664	119	28	1	12478	5	34	29
G-L	0.0	0.0	-37.3214	-37.3214	16	3	0	1408	0	1	0
G-H	-57.4707	-35.5119	-116.555	-209.5376	49	16	7	5707	4	18	8
L-H	-37.5936	-47.3744	-479.662	-564.63	200	36	15	20029	4	20	21

Interface residues

• G-C: ALA129G, ALA281G, ARG456G, ARG469G, ARG476G, ARG480G, ARG58C, ARG59C, ASN197G, ASN279G, ASN280G, ASN30C, ASN32C, ASN362G, ASN39C, ASN425G, ASN478G, ASN52C, ASN66C, ASP368G, ASP457G, ASP461G, ASP474G, ASP477G, ASP53C, ASP56C, ASP63C, ASP88C, CYS126G, CYS196G, GLN258G, GLN25C, GLN33C, GLN40C, GLN428G, GLN64C, GLU102G, GLU13C, GLU275G, GLU370G, GLU429G, GLU85C, GLU87C, GLY128G, GLY194G, GLY366G, GLY367G, GLY38C, GLY41C, GLY431G, GLY458G, GLY459G, GLY471G, GLY472G, GLY473G, GLY47C, HIS105G, HIS27C, ILE24C, ILE284G, ILE34C, ILE36C, ILE371G, ILE424G, ILE467G, ILE83C, LEU125G, LEU37C, LEU44C, LEU453G, LEU454G, LEU61C, LYS21C, LYS22C, LYS282G, LYS29C, LYS35C, LYS432G, LYS460G, LYS46C, MET426G, MET475G, PHE26C, PHE382G, PHE43C, PHE468G, PHE67C, PRO124G, PRO363G, PRO369G, PRO470G, PRO48C, SER195G, SER23C, SER256G, SER31C, SER364G, SER365G, SER375G, SER42C, SER49C, SER60C, THR123G, THR198G, THR257G, THR278G, THR283G, THR455G, THR45C, THR462G, TRP28C, TRP427G, TRP62C, TRP96G, TYR384G, VAL127G, VAL255G, VAL372G, VAL430G
• G-L: ALA204G, ALA436G, ASN93L, CYS119G, CYS205G, GLN203G, ILE201G, LYS121G, MET434G, PRO118G, PRO206G, PRO95L, THR202G, TRP94L, VAL120G, VAL200G
• G-H: ALA100H, ALA433G, ALA436G, ALA57H, ARG31H, ARG419G, ARG50H, ASN100H, ASP100H, ASP55H, CYS119G, CYS205G, GLN203G, GLN422G, GLU100H, GLU370G, GLU97H, GLU99H, GLY100H, GLY98H, HIS58H, ILE201G, ILE30H, ILE420G, ILE423G, ILE424G, ILE52H, ILE53H, LEU122G, LEU54H, LYS121G, LYS421G, LYS432G, LYS73H, MET434G, PRO118G, PRO369G, PRO437G, PRO438G, SER199G, THR198G, THR202G, TYR100H, TYR384G, TYR435G, TYR59H, VAL120G, VAL200G, VAL56H
• L-H: ALA125H, ALA130L, ALA136H, ALA137H, ALA168H, ALA34L, ALA40H, ALA43L, ALA51L, ALA55L, ALA57H, ALA60H, ALA93H, ARG211L, ARG38H, ARG45L, ARG50H, ARG54L, ARG95L, ASN100H, ASN137L, ASN138L, ASN158L, ASN210L, ASN92L, ASN93L, ASP122L, ASP144H, ASP167L, ASP170L, ASP1L, ASP32L, CYS134L, CYS140H, CYS88L, CYS92H, GLN100L, GLN105H, GLN124L, GLN160L, GLN166L, GLN171H, GLN37L, GLN38L, GLN39H, GLN42L, GLN43H, GLN64H, GLN6L, GLN89L, GLN90L, GLU123L, GLU161L, GLU165L, GLU1H, GLU46H, GLU6H, GLY100H, GLY101L, GLY104H, GLY106H, GLY128L, GLY139H, GLY162H, GLY212L, GLY41L, GLY42H, GLY44H, GLY49H, GLY50L, GLY57L, GLY94H, GLY99L, HIS102H, HIS164H, HIS58H, HIS62H, ILE117L, ILE2L, ILE48L, ILE51H, ILE52H, LEU100H, LEU124H, LEU125L, LEU135L, LEU136L, LEU138H, LEU141H, LEU170H, LEU175H, LEU175L, LEU178H, LEU179L, LEU181L, LEU33L, LEU45H, LEU46L, LEU47L, LEU4H, LEU54H, LYS101H, LYS126L, LYS129H, LYS143H, LYS169L, LYS207L, LYS209H, LYS214H, LYS39L, MET48H, PHE100H, PHE116L, PHE118L, PHE122H, PHE139L, PHE166H, PHE209L, PHE91H, PHE98L, PRO119L, PRO120L, PRO123H, PRO126H, PRO167H, PRO40L, PRO44L, PRO61H, PRO95L, SER114L, SER120H, SER121L, SER127H, SER127L, SER128H, SER130H, SER131L, SER132H, SER159L, SER162L, SER168L, SER171L, SER172H, SER173H, SER174L, SER176L, SER177H, SER177L, SER179H, SER180H, SER186H, SER208L, SER31L, SER33H, THR129L, THR131H, THR135H, THR164L, THR165H, THR172L, THR178L, THR180L, THR183H, THR35H, THR56L, THR97L, TRP103H, TRP35L, TRP36H, TRP47H, TRP94L, TYR100H, TYR173L, TYR176H, TYR36L, TYR49L, TYR59H, TYR86L, TYR87L, TYR91L, TYR96H, TYR96L, VAL115L, VAL121H, VAL132L, VAL133L, VAL142H, VAL163H, VAL163L, VAL169H, VAL181H, VAL182H, VAL184H, VAL211H, VAL37H, VAL56H, VAL58L, VAL85L, VAL89H, VAL95H