1RZG

crystal structure of human anti-hiv-1 gp120 reactive antibody 412d

• Total interactions analyzed: 6
• Total true interactions: 5
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 196
  • Norm. En. per Res.: -3.2103
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-59.7091	-53.1303	-516.382	-629.2214	196	15	14	20031	4	24	18
A-C	0.0	0.0	-38.5171	-38.5171	36	1	0	1905	0	1	0
A-D	-13.9246	0.0	-40.8894	-54.814	31	1	0	1598	0	0	1
B-C	0.0	0.0	-0.0279	-0.0279	2	0	0	7	0	1	2
C-D	-34.343	-31.7956	-474.129	-540.2676	182	13	14	17487	2	20	13

Interface residues

• A-B: ALA125A, ALA130B, ALA136A, ALA137A, ALA168A, ALA193B, ALA33A, ALA34B, ALA40A, ALA43B, ALA51B, ALA60A, ALA93A, ARG105A, ARG142B, ARG211B, ARG38A, ARG42B, ARG62A, ASN137B, ASN138B, ASN210B, ASN35A, ASP101A, ASP122B, ASP144A, ASP167B, ASP170B, ASP1B, ASP92B, CYS134B, CYS140A, CYS194B, CYS88B, CYS92A, GLN100B, GLN124B, GLN160B, GLN166B, GLN171A, GLN37B, GLN38B, GLN39A, GLN43A, GLN61A, GLN64A, GLN6A, GLN89B, GLN90B, GLU123B, GLU161B, GLU165B, GLU213B, GLU46A, GLY100A, GLY101B, GLY104A, GLY106A, GLY133A, GLY134A, GLY139A, GLY157B, GLY162A, GLY212B, GLY41B, GLY42A, GLY44A, GLY49A, GLY50A, GLY99B, HIS164A, HIS58A, HIS91B, ILE117B, LEU102A, LEU124A, LEU125B, LEU135B, LEU136B, LEU138A, LEU141A, LEU170A, LEU175A, LEU175B, LEU178A, LEU179B, LEU181B, LEU33B, LEU45A, LEU46B, LEU47B, LYS126B, LYS129A, LYS143A, LYS169B, LYS207B, LYS209A, LYS214A, LYS39B, LYS45B, LYS50B, LYS55B, MET100A, MET48A, MET48B, PHE100A, PHE116B, PHE118B, PHE122A, PHE139B, PHE166A, PHE209B, PHE98B, PRO119B, PRO120B, PRO123A, PRO126A, PRO167A, PRO40B, PRO44B, PRO95A, PRO95B, SER100A, SER114B, SER120A, SER121B, SER127A, SER127B, SER128A, SER130A, SER131B, SER132A, SER161A, SER162B, SER168B, SER172A, SER173A, SER174B, SER176B, SER177A, SER177B, SER179A, SER180A, SER186A, SER208B, SER53B, SER56B, SER93B, SER94A, SER94B, THR129B, THR131A, THR135A, THR164B, THR165A, THR172B, THR178B, THR180B, THR183A, THR206B, THR85B, THR97B, TRP100A, TRP103A, TRP32B, TRP35B, TRP36A, TRP47A, TYR100A, TYR173B, TYR186B, TYR192B, TYR36B, TYR49B, TYR59A, TYR86B, TYR87B, TYR91A, TYR96A, TYR96B, VAL115B, VAL121A, VAL132B, VAL133B, VAL142A, VAL163A, VAL163B, VAL169A, VAL181A, VAL182A, VAL184A, VAL205B, VAL207A, VAL211A, VAL37A, VAL89A
• A-C: ALA114C, ALA158A, ARG83C, ASN155A, GLN171C, GLN192A, GLU85C, GLY157A, GLY15C, GLY174C, LEU159A, LEU170C, LEU175C, LEU82C, LYS13C, LYS143C, PRO113C, PRO14C, PRO185A, SER112C, SER153A, SER156A, SER161A, SER16C, SER172C, SER173C, SER188A, SER82C, SER84C, THR160A, THR191A, THR193A, TRP154A, TYR194A, VAL111C, VAL184A
• A-D: ALA130D, ALA184D, ASN158D, ASP185D, GLN155D, GLN192A, GLY128D, GLY133A, GLY134A, GLY157D, GLY190A, LEU154D, LEU179D, LEU181D, LEU189A, LYS183D, LYS188D, PRO185A, SER131D, SER156D, SER159D, SER182D, SER186A, SER187A, SER188A, THR129D, THR135A, THR180D, THR191A, TYR186D, VAL184A
• B-C: GLN61C, SER80B
• C-D: ALA125C, ALA130D, ALA136C, ALA137C, ALA168C, ALA33C, ALA34D, ALA40C, ALA43D, ALA51D, ALA57C, ALA60C, ALA93C, ARG105C, ARG142D, ARG38C, ARG42D, ARG62C, ASN137D, ASN138D, ASN158D, ASN31D, ASN35C, ASN98C, ASP101C, ASP122D, ASP144C, ASP167D, ASP170D, ASP1D, ASP92D, CYS134D, CYS140C, CYS88D, CYS92C, GLN100D, GLN124D, GLN160D, GLN166D, GLN171C, GLN37D, GLN38D, GLN39C, GLN43C, GLN61C, GLN64C, GLN6C, GLN89D, GLN90D, GLU123D, GLU161D, GLU165D, GLU46C, GLY100C, GLY101D, GLY104C, GLY106C, GLY139C, GLY157D, GLY162C, GLY174C, GLY41D, GLY42C, GLY44C, GLY49C, GLY50C, GLY99D, HIS164C, HIS58C, HIS91D, ILE117D, LEU102C, LEU124C, LEU125D, LEU135D, LEU136D, LEU138C, LEU141C, LEU170C, LEU175C, LEU175D, LEU178C, LEU179D, LEU181D, LEU33D, LEU45C, LEU46D, LEU47D, LYS117C, LYS126D, LYS143C, LYS169D, LYS209C, LYS39D, LYS45D, LYS50D, LYS55D, MET100C, MET48C, MET48D, PHE100C, PHE116D, PHE118D, PHE122C, PHE139D, PHE166C, PHE98D, PRO119D, PRO120D, PRO123C, PRO126C, PRO167C, PRO213C, PRO40D, PRO44D, PRO95C, PRO95D, SER100C, SER114D, SER120C, SER121D, SER127D, SER131D, SER161C, SER162D, SER168D, SER172C, SER173C, SER174D, SER176D, SER177C, SER177D, SER179C, SER180C, SER186C, SER53D, SER56D, SER93D, SER94C, SER94D, THR129D, THR135C, THR164D, THR165C, THR172D, THR178D, THR180D, THR183C, THR85D, THR97D, TRP100C, TRP103C, TRP32D, TRP35D, TRP36C, TRP47C, TYR100C, TYR173D, TYR176C, TYR36D, TYR49D, TYR59C, TYR86D, TYR87D, TYR91C, TYR96C, TYR96D, VAL115D, VAL121C, VAL132D, VAL133D, VAL142C, VAL163C, VAL163D, VAL169C, VAL181C, VAL182C, VAL184C, VAL207C, VAL211C, VAL37C, VAL89C