1RYP
crystal structure of the 20s proteasome from yeast at 2.4 angstroms resolution
Total interactions analyzed 378
Total true interactions 98
Strongest Interaction Chains Q-S
Int. Res. 15
Norm. En. per Res. -5.1697
Hub Node A(7)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -75.3487 -24.6311 -415.404 -515.3838 132 16 13 15834 2 22 27
A-C 0.0 3.3632 -30.7234 -27.3602 17 1 3 1102 0 2 5
A-E 0.0 0.0 -0.035 -0.035 2 0 0 10 0 0 0
A-G -69.815 -42.9478 -394.901 -507.6638 127 11 9 14611 3 25 27
A-H -14.9328 -37.0052 -79.1833 -131.1214 46 2 4 3594 2 13 16
A-I -20.793 -75.7488 -171.42 -267.9618 61 5 1 5998 10 14 21
A-2 -2.3088 -4.963 -10.7367 -18.0085 14 0 0 518 0 3 4
B-C -42.3547 -14.1389 -400.082 -456.5756 135 16 7 15561 1 23 22
B-D 0.0 -11.7903 -15.5836 -27.3739 12 0 1 609 0 2 2
B-E 0.0 -7.0409 -5.746 -12.7869 7 1 0 219 0 2 1
B-F 0.0 0.0 -11.9173 -11.9173 10 0 0 490 0 1 0
B-G 0.0 0.0 -21.0059 -21.0059 18 4 0 1128 0 0 1
B-I -52.1007 -35.1851 -168.728 -256.0138 74 9 4 6666 1 17 20
B-J -14.2269 6.6777 -118.787 -126.3362 56 1 2 4827 1 15 21
C-D -70.4702 6.3252 -461.447 -525.5919 143 29 8 18383 1 33 36
C-E -3.7808 -47.4841 -22.4312 -73.6961 16 0 0 931 2 8 6
C-F 0.0 -32.015 -35.4557 -67.4707 20 2 0 1128 2 4 2
C-G 0.0 0.0 -24.588 -24.588 18 0 0 1058 0 1 1
C-I 0.0 24.1754 -5.1318 19.0435 10 0 0 220 0 5 4
C-J 0.0 -7.4544 -108.488 -115.9424 51 2 0 4855 0 17 20
C-K -17.1293 -35.2043 -133.555 -185.8886 51 7 2 4649 4 20 24
D-E -61.5176 -50.852 -365.697 -478.0666 126 20 9 14292 2 27 30
D-F 0.0 0.0 -0.073 -0.073 3 0 0 21 0 1 0
D-K -11.3829 -13.1784 -79.5715 -104.1328 43 9 2 3859 2 17 13
D-L -32.0647 -41.0907 -59.7209 -132.8763 37 2 1 2568 9 30 24
E-F -61.1022 -38.824 -300.851 -400.7772 123 17 7 12408 2 34 35
E-G 0.0 0.0 -0.0069 -0.0069 2 0 0 1 0 0 0
E-L -10.2241 -51.5195 -92.1496 -153.8932 50 4 1 4207 6 27 26
E-M -15.1564 -39.4124 -131.853 -186.4218 51 2 0 4671 3 31 28
F-G -77.6504 -27.821 -401.597 -507.0683 133 14 11 14801 2 33 33
F-M -10.8138 -21.6179 -75.9813 -108.413 42 3 0 3147 2 13 19
F-N 0.0 -23.7539 -132.054 -155.808 54 3 3 5059 1 28 12
G-H -16.4146 -19.9768 -92.2976 -128.6889 50 1 2 4184 2 14 10
G-N -17.2357 -79.5613 -93.3765 -190.1735 54 4 2 3946 7 34 22
H-I -46.4788 -49.3691 -131.299 -227.1469 74 4 3 5188 3 20 12
H-N -22.7308 -20.4462 -134.362 -177.539 66 2 1 5901 2 22 14
H-V -41.8052 -19.9576 -193.954 -255.7168 54 15 3 6870 4 10 11
H-2 -108.3857 1.427 -394.015 -500.9736 116 20 9 14280 3 29 30
I-J -136.8931 -138.3863 -369.044 -644.3234 143 19 13 15175 9 42 36
I-Z 0.0 0.0 -9.5749 -9.5749 7 0 1 480 0 0 0
I-1 -98.7917 -68.4106 -380.692 -547.8943 119 23 5 14802 4 33 40
I-2 0.0 -34.5117 -200.129 -234.6407 92 6 5 9126 1 21 20
J-K -21.4595 -63.5667 -110.801 -195.8271 74 7 4 5645 4 12 11
J-Z -76.5903 -53.4496 -266.633 -396.673 91 9 4 9908 5 20 21
J-1 -34.5982 -20.9701 -192.981 -248.5493 73 12 1 7575 3 19 20
K-L -20.7518 -32.4427 -146.728 -199.9225 69 6 4 6226 4 21 21
K-Y -51.0718 -9.135 -149.428 -209.6348 58 4 4 6380 2 18 28
K-Z -31.4984 -44.3942 -206.766 -282.6586 78 7 1 7845 5 19 18
L-M -46.4549 -46.6254 -178.256 -271.3363 87 11 4 6293 4 25 16
L-W 0.0 0.0 -10.5053 -10.5053 7 0 1 504 0 0 0
L-X -76.2327 -51.6645 -267.889 -395.7862 92 10 4 9943 5 20 20
L-Y -33.4869 -47.0669 -207.717 -288.2708 78 12 1 7910 6 20 19
M-N -44.6224 -29.4666 -223.605 -297.6939 92 10 5 9267 10 27 23
M-W -82.8746 -69.2555 -381.323 -533.4531 118 21 5 14697 4 34 40
M-X -36.1688 -22.6614 -179.983 -238.8133 74 15 1 7567 3 19 20
N-O 0.0 0.0 -10.7229 -10.7229 14 1 0 525 0 3 4
N-V -100.7367 4.9245 -388.89 -484.7023 115 19 9 14200 3 29 30
N-W -2.1197 -35.1663 -202.832 -240.118 92 3 5 9171 1 21 20
O-P -83.8669 -25.7869 -423.375 -533.0288 134 16 13 15923 3 22 27
O-Q 0.0 3.5878 -36.0913 -32.5035 18 2 3 1208 0 2 5
O-S 0.0 0.0 -0.0885 -0.0885 2 0 0 18 0 0 0
O-U -68.7057 -42.9895 -405.746 -517.4412 130 14 9 14834 5 25 27
O-V -13.2405 -33.3623 -74.1306 -120.7334 46 2 4 3504 2 13 16
O-W -26.4867 -46.8164 -165.498 -238.8011 60 6 1 5906 9 14 21
P-Q -42.2938 -13.0686 -401.597 -456.9594 137 15 7 15705 1 24 21
P-R 0.0 -12.7045 -18.3306 -31.0351 12 0 1 640 0 2 2
P-S -3.3741 -8.1036 -7.2834 -18.761 7 2 0 244 0 3 1
P-T 0.0 0.0 -9.3587 -9.3587 10 0 0 427 0 1 0
P-U 0.0 0.0 -13.9513 -13.9513 16 5 0 1067 0 0 1
P-W -47.3134 -37.837 -170.199 -255.3494 77 10 3 6673 1 18 21
P-X -14.1722 1.0409 -119.669 -132.8003 57 0 2 4715 1 16 22
Q-R -64.2668 5.2952 -441.926 -500.8975 140 29 6 17774 1 33 36
Q-S -5.9143 -47.6264 -24.0049 -77.5457 15 4 0 943 2 7 6
Q-T 0.0 -32.3653 -31.8018 -64.1671 16 3 0 1056 2 4 2
Q-U 0.0 0.0 -25.9854 -25.9854 17 1 0 1055 0 1 0
Q-W 0.0 24.4057 -5.7932 18.6125 10 0 0 243 0 5 4
Q-X 0.0 -8.352 -111.118 -119.47 51 3 0 4889 0 18 21
Q-Y -12.0677 -31.965 -135.392 -179.4247 50 11 3 4715 4 21 24
R-S -48.26 -31.82 -350.021 -430.101 126 17 8 13947 2 25 29
R-T 0.0 0.0 -0.0583 -0.0583 2 0 0 17 0 1 0
R-Y -15.9079 -11.1808 -78.0994 -105.1881 42 7 2 3777 2 17 13
R-Z -33.9491 -43.5678 -62.5142 -140.0311 37 3 1 2568 8 31 25
S-T -59.3815 -38.4672 -298.499 -396.3477 121 16 7 12326 2 35 34
S-U 0.0 0.0 -0.0071 -0.0071 2 0 0 1 0 0 0
S-Z -7.8492 -37.3137 -92.9015 -138.0643 49 3 1 4173 6 26 24
S-1 -5.0574 -39.7252 -134.141 -178.9236 51 0 0 4667 3 31 29
T-U -82.8106 -24.3977 -409.868 -517.0763 134 20 11 15163 2 32 32
T-1 -6.0292 -28.7676 -81.3165 -116.1133 43 3 0 3172 1 13 19
T-2 0.0 -28.2084 -136.436 -164.6444 55 6 3 5146 1 28 12
U-V -12.0886 -18.6722 -93.832 -124.5928 50 2 2 4200 1 14 10
U-2 -15.3317 -77.342 -95.7185 -188.3922 55 5 2 3988 7 34 22
V-W -44.0961 -47.9986 -126.199 -218.2938 74 3 3 5135 3 20 12
V-2 -25.5189 -20.8816 -141.859 -188.2594 68 4 1 5988 1 22 15
W-X -137.6733 -141.7073 -376.887 -656.2676 143 22 15 15348 11 42 35
X-Y -18.6857 -61.8049 -115.37 -195.8606 73 6 4 5794 4 13 11
Y-Z -28.0961 -30.4225 -142.573 -201.0916 68 5 4 6128 4 21 21
Z-1 -38.197 -48.7692 -166.436 -253.4022 84 8 4 6108 4 25 15
1-2 -52.5653 -27.303 -224.338 -304.2063 94 10 5 9356 10 27 23