1RY1

structure of the signal recognition particle interacting with the elongation-arrested ribosome

• Total interactions analyzed: 91
• Total true interactions: 6
• Strongest Interaction:
  • Chains: C-D
  • Int. Res.: 103
  • Norm. En. per Res.: -4.8305
• Hub Node: B(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
C-D	-98.3971	2.9839	-402.127	-497.5401	103	33	10	15859	1	22	38
B-W	0.0	-5.8909	-14.6489	-20.5398	20	0	0	893	0	6	6
B-S	0.0	0.0	-4.5983	-4.5983	4	0	0	154	0	0	2
U-W	-51.2891	-8.291	4026.08	3966.4999	77	625	5	14242	0	9	14
U-S	0.0	0.0	-0.0003	-0.0003	2	0	0	1	0	0	0
W-S	-91.1063	-24.0244	859.567	744.4363	69	203	3	8567	3	9	14

Interface residues

• C-D: ALA25C, ALA56C, ALA60D, ALA75C, ALA89D, ARG21D, ARG26C, ARG32C, ARG59D, ARG71C, ARG88D, ASN37C, ASN54D, ASN77D, ASN85D, ASN90D, ASP21C, ASP34D, ASP35C, ASP44C, ASP45C, ASP54C, ASP58C, ASP62D, ASP92D, CYS20D, CYS39C, CYS56D, GLN18D, GLN55C, GLN57C, GLN68C, GLN80D, GLU63C, GLU75D, GLY24D, GLY35D, GLY36C, GLY93D, HIS33C, HIS66C, ILE28D, ILE62C, LEU13D, LEU16D, LEU29C, LEU30D, LEU38C, LEU57D, LEU58D, LEU69C, LEU72C, LEU87D, LEU94D, LYS24C, LYS30C, LYS31D, LYS32D, LYS41C, LYS52C, LYS55D, LYS60C, LYS61C, LYS64C, LYS74D, LYS95D, MET23C, MET70C, MET73C, MET91D, PHE17D, PHE65C, PHE79D, PHE9D, PRO22C, SER23D, SER25D, SER34C, SER67C, SER72D, SER73D, SER84D, THR22D, THR29D, THR43C, THR53C, THR61D, THR69D, TYR18C, TYR27D, TYR31C, TYR33D, TYR83D, VAL26D, VAL27C, VAL28C, VAL40C, VAL42C, VAL59C, VAL70D, VAL71D, VAL74C, VAL76D
• B-W: ALA407W, ARG405W, ARG408W, ARG415W, ARG74B, ARG79B, ASN73B, ASP416W, ASP75B, GLN404W, GLU71B, GLY409W, GLY411W, LYS374W, MET67B, SER410W, SER413W, THR414W, TRP72B, VAL412W
• B-S: ARG74B, ARG79B, LYS67S, MET67B
• U-W: ALA270U, ALA288U, ALA76U, ALA81U, ALA90U, ARG286U, ARG290U, ARG91U, ASN364W, ASP358W, GLN347W, GLN366W, GLU280U, GLU285U, GLU365W, GLU80U, GLU84U, GLU89U, GLY124U, GLY241U, GLY289U, GLY293U, GLY343W, GLY350W, GLY354W, GLY356W, GLY363W, GLY87U, GLY88U, ILE267U, ILE291U, ILE348W, ILE352W, LEU118U, LEU215U, LEU242U, LEU279U, LEU287U, LEU292U, LEU349W, LEU75U, LEU82U, LEU86U, LEU92U, LEU95U, LYS125U, LYS341W, LYS362W, LYS83U, MET1U, MET294U, MET351W, MET360W, PHE269U, PHE282U, PHE345W, PHE355W, PHE359W, PRO266U, PRO281U, PRO284U, PRO344W, PRO353W, PRO93U, SER346W, SER361W, THR357W, THR77U, TRP101U, TYR121U, TYR122U, TYR268U, TYR283U, TYR79U, VAL243U, VAL78U, VAL94U
• U-S: ARG286U, LEU59S
• W-S: ALA370W, ALA407W, ALA428W, ARG371W, ARG415W, ASN338W, ASN364W, ASN55S, ASP416W, GLN335W, GLN366W, GLN418W, GLN423W, GLN64S, GLU365W, GLU367W, GLU419W, GLY343W, GLY363W, GLY411W, GLY51S, HIS65S, ILE339W, ILE378W, ILE54S, LEU349W, LEU372W, LEU375W, LEU420W, LEU421W, LEU50S, LEU57S, LEU59S, LYS362W, LYS373W, LYS374W, LYS426W, LYS66S, LYS67S, MET332W, MET340W, MET342W, MET360W, MET369W, MET379W, MET430W, MET434W, PHE327W, PHE336W, PHE355W, PHE359W, PHE427W, PHE52S, PHE56S, PRO53S, SER368W, SER410W, SER413W, THR414W, THR422W, THR58S, THR62S, TYR424W, TYR60S, VAL412W, VAL417W, VAL431W, VAL61S, VAL63S