1RM1

structure of a yeast tfiia/tbp/tata-box dna complex

• Total interactions analyzed: 10
• Total true interactions: 3
• Strongest Interaction:
  • Chains: B-C
  • Int. Res.: 197
  • Norm. En. per Res.: -5.8451
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-51.9039	-26.0787	-118.467	-196.4496	47	8	1	3878	2	10	11
A-C	-18.9476	16.5998	-152.285	-154.6328	46	7	6	5380	0	13	12
B-C	-167.1185	-113.6391	-870.721	-1151.4787	197	38	38	35239	4	68	56

Interface residues

• A-B: ALA113A, ALA86A, ALA89A, ALA92A, ARG105A, ARG107A, ARG112B, ARG90A, ARG98A, ASN117B, ASN65B, ASN91A, ASN95A, ASP67B, ASP73B, ASP74B, CYS72B, GLU93A, GLY70B, ILE103A, ILE106A, ILE79B, LEU66B, LEU82A, LEU87A, LYS110B, LYS119B, LYS120B, LYS81B, LYS83A, LYS97A, MET104A, PHE71B, PHE78B, PRO96A, THR111A, THR112A, THR68B, THR77B, THR84A, TRP76B, TYR139A, TYR69B, TYR94A, VAL102A, VAL75B, VAL85A
• A-C: ALA256C, ALA86A, ALA89A, ALA92A, ARG105A, ARG107A, ARG141A, ARG253C, ARG257C, ARG90A, ASN91A, ASN95A, ASP228C, GLN144A, GLN68A, GLU108A, GLU284C, GLU93A, GLY147A, HIS88A, ILE103A, ILE106A, ILE142A, ILE143A, ILE146A, ILE231C, LEU230C, LEU87A, LYS110A, LYS127A, LYS138A, LYS145A, LYS255C, MET104A, PRO109A, SER232C, THR111A, THR112A, TRP258C, TRP285C, TYR139A, TYR229C, TYR248C, VAL251C, VAL286C, VAL85A
• B-C: ALA115B, ALA22B, ALA256C, ALA279C, ALA283C, ALA28C, ALA37B, ALA49B, ALA6C, ARG112B, ARG11B, ARG12B, ARG22C, ARG253C, ARG257C, ARG271C, ARG31B, ARG39B, ARG8C, ASN117B, ASN17B, ASN19C, ASN242C, ASN270C, ASN272C, ASN27C, ASN3C, ASN40C, ASN55B, ASN65B, ASP109B, ASP21B, ASP228C, ASP237C, ASP240C, ASP249C, ASP24B, ASP24C, ASP264C, ASP273C, ASP29B, ASP31C, ASP37C, ASP45B, ASP54B, ASP67B, ASP73B, ASP74B, CYS116B, CYS246C, CYS260C, CYS72B, CYS83B, GLN277C, GLN280C, GLN33C, GLN36C, GLN43C, GLN57B, GLN84B, GLU11C, GLU15C, GLU20C, GLU236C, GLU23C, GLU241C, GLU26C, GLU282C, GLU284C, GLU33B, GLU42B, GLU48C, GLU50B, GLU5C, GLU88B, GLU8B, GLY16B, GLY238C, GLY265C, GLY29C, GLY30B, GLY64B, GLY70B, ILE106B, ILE113B, ILE12C, ILE13C, ILE15B, ILE231C, ILE269C, ILE27B, ILE30C, ILE32B, ILE41C, ILE79B, LEU111B, LEU19B, LEU230C, LEU23B, LEU243C, LEU245C, LEU247C, LEU262C, LEU26B, LEU35C, LEU36B, LEU38C, LEU41B, LEU46C, LEU52B, LEU60B, LEU66B, LEU9B, LYS110B, LYS119B, LYS250C, LYS259C, LYS263C, LYS278C, LYS39C, LYS44C, LYS45C, LYS46B, LYS50C, LYS53B, LYS59B, LYS63B, LYS81B, MET244C, PHE25C, PHE276C, PHE44B, PHE54C, PHE71B, PHE78B, PRO239C, SER107B, SER118B, SER13B, SER16C, SER18B, SER232C, SER261C, SER35B, SER58B, SER7C, THR14B, THR252C, THR25B, THR268C, THR275C, THR34C, THR43B, THR47C, THR49C, THR51B, THR52C, THR56B, THR61B, THR68B, THR77B, THR86B, TRP258C, TRP285C, TRP42C, TRP56C, TRP76B, TYR10B, TYR10C, TYR229C, TYR248C, TYR274C, TYR69B, TYR6B, TYR7B, VAL108B, VAL114B, VAL14C, VAL17C, VAL18C, VAL20B, VAL21C, VAL251C, VAL266C, VAL267C, VAL281C, VAL286C, VAL40B, VAL47B, VAL48B, VAL51C, VAL62B, VAL75B, VAL80B, VAL85B, VAL87B, VAL9C