1RIO

structure of bacteriophage lambda ci-ntd in complex with sigma-region4 of thermus aquaticus bound to dna

• Total interactions analyzed: 10
• Total true interactions: 2
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 73
  • Norm. En. per Res.: -5.2489
• Hub Node: A(1)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
H-B	-11.1259	-80.725	-11.3964	-103.2473	25	5	0	1250	4	12	8
A-B	-49.8107	-87.1509	-246.209	-383.1706	73	8	20	9473	6	35	47

Interface residues

• H-B: ALA38B, ARG411H, ARG413H, ARG421H, ASN417H, ASP39B, GLN34B, GLN414H, GLN45B, GLU35B, GLU410H, GLU416H, GLY31B, GLY42B, GLY44B, ILE415H, LEU32B, LYS40B, LYS418H, LYS422H, SER33B, SER36B, SER46B, TYR425H, VAL37B
• A-B: ALA60A, ALA60B, ALA63A, ALA63B, ALA64A, ALA64B, ALA67A, ALA67B, ALA82A, ALA82B, ALA91A, ALA91B, ARG18B, ARG83A, ARG83B, ASN59A, ASN59B, GLU75A, GLU75B, GLU76A, GLU76B, GLU84A, GLU84B, GLU87A, GLU87B, GLU90A, GLU90B, HIS93A, HIS93B, HIS94A, HIS94B, HIS95A, HIS95B, HIS96A, HIS97A, HIS98A, ILE22B, ILE69A, ILE69B, ILE81A, ILE81B, ILE85A, ILE85B, LEU65A, LEU65B, LEU66A, LEU66B, LEU70B, LYS26B, LYS68A, LYS68B, LYS71A, LYS71B, PHE77A, PHE77B, PRO79A, PRO79B, SER73A, SER73B, SER78A, SER78B, TYR61A, TYR61B, TYR86A, TYR86B, TYR89A, TYR89B, VAL72A, VAL72B, VAL74A, VAL74B, VAL92A, VAL92B