1R9T
rna polymerase ii strand separated elongation complex, mismatched nucleotide
Total interactions analyzed 78
Total true interactions 22
Strongest Interaction Chains C-L
Int. Res. 57
Norm. En. per Res. -3.7751
Hub Node A(7)
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Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -395.9531 -227.6315 -2118.67 -2742.2545 761 295 59 107040 18 260 242
A-C -5.5024 5.8722 -56.9799 -56.6101 55 17 0 3169 0 16 15
A-E -74.8419 -55.6751 -354.95 -485.4669 204 66 15 23059 7 76 64
A-F -45.7176 -40.7657 -356.877 -443.3604 156 47 13 18097 0 47 40
A-H -62.1772 -10.0922 -347.815 -420.0844 143 47 9 17307 1 36 33
A-I -75.7001 -44.6258 -388.01 -508.3359 146 47 10 17031 6 54 51
A-K -25.386 -31.1686 -226.703 -283.2576 89 16 7 9948 2 21 20
B-C -40.2471 -110.9208 -409.439 -560.6069 164 51 3 17284 8 56 60
B-F 0.0 0.0 -8.1419 -8.1419 18 2 0 417 0 3 6
B-H 0.0 0.0 -1.3502 -1.3502 3 0 0 60 0 0 0
B-I -17.6423 -42.7401 -248.138 -308.5204 132 34 2 13540 0 50 49
B-J -21.94 -53.3067 -364.872 -440.1187 139 48 6 17666 4 35 37
B-K -10.7759 -11.8216 12.4663 -10.1311 56 15 0 2918 3 17 18
B-L -68.5595 -66.8409 -194.01 -329.4104 106 32 10 10862 9 45 44
C-H 0.0 -10.0235 -22.6733 -32.6968 25 0 1 1265 1 9 6
C-J -51.5189 -52.2519 -171.092 -274.8628 113 40 8 11918 5 41 29
C-K -20.3085 -41.3254 -442.425 -504.0589 148 26 12 22023 7 46 47
C-L -41.9312 -43.7415 -129.506 -215.1788 57 10 9 5534 8 23 16
E-F -9.418 -28.4343 -19.2906 -57.1429 21 2 0 1086 2 6 6
H-K 0.0 0.0 -23.3448 -23.3448 25 2 0 1498 0 6 5
J-L 0.0 0.0 -4.4787 -4.4787 9 0 0 240 0 0 1
K-L 0.0 6.9928 -0.6497 6.343 5 0 0 145 0 2 2