1R5T

the crystal structure of cytidine deaminase cdd1, an orphan c to u editase from yeast

• Total interactions analyzed: 6
• Total true interactions: 6
• Strongest Interaction:
  • Chains: A-C
  • Int. Res.: 120
  • Norm. En. per Res.: -3.5948
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-40.0313	4.7955	-218.634	-253.8698	95	7	2	9201	0	7	7
A-C	-83.017	15.1701	-363.533	-431.3799	120	20	13	14438	0	12	5
A-D	0.0	0.0	-90.308	-90.308	47	4	1	3537	0	0	2
B-C	-11.107	0.0	-100.117	-111.224	47	4	1	3755	0	0	2
B-D	-81.9658	13.5582	-328.213	-396.6206	112	20	11	13228	0	10	5
C-D	-31.1985	3.0915	-238.568	-266.675	89	14	2	9361	0	6	7

Interface residues

• A-B: ALA135A, ALA135B, ARG100A, ARG100B, ARG122A, ARG33B, ARG64A, ARG64B, ASN104A, ASN104B, ASN142A, ASN58A, ASN58B, ASP87B, ASP90B, CYS61A, CYS61B, CYS92A, CYS92B, CYS96A, CYS96B, CYS99A, CYS99B, GLN101A, GLN101B, GLN91A, GLN91B, GLU130A, GLU130B, GLU52B, GLU63B, GLU89B, GLY129A, GLY129B, GLY137A, GLY137B, GLY86A, GLY86B, GLY97A, GLY97B, HIS140A, HIS31B, ILE113A, ILE60A, ILE84B, LEU116A, LEU116B, LEU131A, LEU131B, LEU132A, LEU132B, LEU141A, LYS109B, LYS124A, LYS124B, MET115A, MET115B, MET126A, MET126B, MET128A, MET128B, MET134A, MET134B, PHE102A, PHE102B, PHE136A, PHE136B, PHE32A, PHE32B, PRO133A, PRO133B, PRO138A, PRO138B, PRO95A, PRO95B, SER123A, SER123B, SER139A, SER139B, SER30A, SER30B, SER57A, SER57B, SER88A, SER88B, SER94A, SER94B, VAL125A, VAL125B, VAL34A, VAL34B, VAL93A, VAL93B, VAL98A, VAL98B
• A-C: ALA135A, ALA135C, ALA21A, ALA21C, ALA49A, ALA49C, ALA54A, ALA54C, ALA62A, ALA62C, ALA66A, ALA66C, ALA73A, ALA73C, ARG100A, ARG100C, ARG33C, ARG64A, ARG64C, ARG76A, ARG76C, ASN104A, ASN104C, ASN142A, ASN50A, ASN50C, ASN53A, ASN53C, ASN58A, ASN58C, CYS59A, CYS59C, CYS61A, CYS61C, CYS96A, CYS96C, CYS99A, CYS99C, GLN101A, GLN101C, GLN69A, GLN69C, GLU105A, GLU105C, GLU23A, GLU23C, GLU52A, GLU52C, GLY137A, GLY137C, GLY48A, GLY48C, GLY74A, GLY74C, GLY97A, GLY97C, HIS140A, HIS140C, HIS75A, HIS75C, ILE103A, ILE103C, ILE60A, ILE60C, ILE68A, ILE68C, LEU132A, LEU132C, LEU141A, LEU141C, LEU24A, LEU24C, LEU71A, LEU71C, MET67A, MET67C, MET72A, MET72C, PHE102A, PHE102C, PHE106A, PHE106C, PHE136A, PHE136C, PHE46A, PHE46C, PRO138A, PRO138C, PRO28A, PRO28C, SER139A, SER139C, SER25A, SER25C, SER27A, SER27C, SER55A, SER55C, SER57A, SER57C, SER65A, SER65C, THR47A, THR47C, TRP79A, TRP79C, TYR26A, TYR26C, TYR29A, TYR29C, TYR56A, TYR56C, VAL34A, VAL34C, VAL51A, VAL51C, VAL70A, VAL70C, VAL98A, VAL98C
• A-D: ALA54A, ALA54D, ARG64A, ARG64D, ASN50A, ASN50D, ASN53A, ASN53D, ASN58A, ASN58D, CYS59A, CYS59D, CYS61A, CYS61D, CYS96A, CYS96D, CYS99A, CYS99D, GLU52A, GLU52D, GLY97A, GLY97D, HIS31A, HIS31D, ILE60A, ILE60D, PHE32A, PHE32D, PRO28A, PRO95A, PRO95D, SER27A, SER27D, SER30A, SER30D, SER55A, SER55D, SER57A, SER57D, TYR29A, TYR29D, TYR56A, TYR56D, VAL51A, VAL51D, VAL98A, VAL98D
• B-C: ALA54B, ALA54C, ARG64B, ARG64C, ASN50B, ASN50C, ASN53B, ASN53C, ASN58B, ASN58C, CYS59B, CYS59C, CYS61B, CYS61C, CYS96B, CYS96C, CYS99B, CYS99C, GLU52B, GLU52C, GLY97B, GLY97C, HIS31B, HIS31C, ILE60B, ILE60C, PHE32B, PHE32C, PRO28B, PRO95B, PRO95C, SER27B, SER27C, SER30B, SER30C, SER55B, SER55C, SER57B, SER57C, TYR29B, TYR29C, TYR56B, TYR56C, VAL51B, VAL51C, VAL98B, VAL98C
• B-D: ALA135D, ALA21B, ALA21D, ALA49B, ALA49D, ALA54B, ALA54D, ALA62B, ALA62D, ALA66B, ALA66D, ALA73B, ALA73D, ARG100B, ARG100D, ARG33D, ARG64B, ARG64D, ARG76B, ARG76D, ASN104B, ASN104D, ASN50B, ASN50D, ASN53B, ASN53D, ASN58B, ASN58D, CYS22D, CYS59B, CYS59D, CYS61B, CYS61D, CYS96B, CYS99B, CYS99D, GLN101B, GLN101D, GLN69B, GLN69D, GLU105B, GLU105D, GLU23B, GLU23D, GLU52B, GLU52D, GLY137B, GLY48B, GLY48D, GLY74B, GLY74D, GLY97B, GLY97D, HIS75B, HIS75D, ILE103B, ILE103D, ILE60B, ILE60D, ILE68B, ILE68D, LEU132B, LEU132D, LEU24B, LEU24D, LEU71B, LEU71D, MET67B, MET67D, MET72B, MET72D, PHE102B, PHE102D, PHE106B, PHE106D, PHE136B, PHE136D, PHE46B, PHE46D, PRO138B, PRO28B, PRO28D, SER139B, SER25B, SER25D, SER27B, SER27D, SER55B, SER55D, SER57B, SER57D, SER65B, SER65D, SER77D, THR47B, THR47D, TRP79B, TRP79D, TYR26B, TYR26D, TYR29B, TYR29D, TYR56B, TYR56D, VAL34B, VAL34D, VAL51B, VAL51D, VAL70B, VAL70D, VAL98B, VAL98D
• C-D: ALA135C, ALA135D, ARG100C, ARG100D, ARG64C, ARG64D, ASN104C, ASN104D, ASN117D, ASN50D, ASN58C, ASN58D, ASP87D, ASP90D, CYS61C, CYS85D, CYS92C, CYS92D, CYS96C, CYS96D, CYS99C, CYS99D, GLN101C, GLN101D, GLN91C, GLN91D, GLU130C, GLU130D, GLU52D, GLU63C, GLU63D, GLU89D, GLY129C, GLY129D, GLY137C, GLY86D, GLY97C, GLY97D, HIS140C, ILE113D, ILE60C, ILE84D, LEU116D, LEU131C, LEU131D, LEU132C, LEU132D, LEU141C, LYS124C, LYS124D, MET115C, MET115D, MET126C, MET126D, MET128C, MET128D, MET134C, MET134D, PHE102C, PHE102D, PHE136C, PHE136D, PHE32C, PHE32D, PRO133C, PRO133D, PRO138C, PRO95C, PRO95D, SER118D, SER123C, SER123D, SER139C, SER30D, SER57C, SER57D, SER88C, SER88D, SER94C, SER94D, VAL114D, VAL125C, VAL125D, VAL34C, VAL34D, VAL93C, VAL93D, VAL98C, VAL98D