1QY9

crystal structure of e. coli se-met protein ydde

• Total interactions analyzed: 6
• Total true interactions: 4
• Strongest Interaction:
  • Chains: C-D
  • Int. Res.: 103
  • Norm. En. per Res.: -3.9168
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-83.2316	-5.2903	-305.831	-394.3528	101	10	17	11354	8	23	22
A-C	0.0	38.0824	-16.3924	21.69	21	1	0	482	1	18	16
A-D	-33.8615	-26.5259	-102.866	-163.2534	71	6	2	3945	3	30	16
C-D	-85.0377	-5.8841	-312.509	-403.4308	103	12	16	11403	8	24	24

Interface residues

• A-B: ALA10A, ALA10B, ALA21A, ALA21B, ALA258A, ALA258B, ALA291A, ALA291B, ALA294A, ALA294B, ALA33A, ALA33B, ALA39A, ALA39B, ARG17A, ARG17B, ARG257A, ARG257B, ARG261A, ARG261B, ARG40A, ARG40B, ASN182A, ASN182B, ASN19A, ASN19B, ASP262A, ASP262B, ASP9A, ASP9B, GLN14A, GLN14B, GLN34A, GLN34B, GLN4A, GLN4B, GLU292A, GLU292B, GLU296A, GLU296B, GLU41A, GLU41B, GLY18A, GLY18B, GLY256A, GLY256B, GLY260A, GLY260B, GLY43A, GLY43B, HIS290A, HIS290B, HIS44A, HIS44B, HIS7A, HIS7B, ILE287A, ILE287B, ILE295A, ILE295B, ILE38A, ILE38B, LEU259A, LEU259B, LEU288A, LEU288B, LEU297A, LEU297B, LEU30A, LEU30B, LEU37A, LEU37B, LEU42A, LEU42B, LYS85A, LYS85B, PHE16A, PHE16B, PHE289A, PHE289B, PRO15A, PRO15B, PRO223A, PRO223B, PRO3A, PRO3B, SER13A, SER13B, SER20A, SER20B, TRP293A, TRP293B, TYR6A, TYR6B, VAL24A, VAL286A, VAL286B, VAL5A, VAL5B, VAL8A, VAL8B
• A-C: ALA176C, ALA258C, ARG17C, ARG211C, ARG257C, ARG59A, ARG61A, ASN29A, ASP173C, ASP175C, ASP28A, ASP54A, ASP55A, GLU171C, HIS52A, ILE174C, LEU177C, LEU99A, PRO203C, SER178C, SER53A
• A-D: ALA100A, ALA100D, ALA157A, ALA27D, ALA33D, ARG272A, ARG59D, ARG61D, ASN194A, ASN29D, ASP273A, ASP28D, ASP54D, ASP55D, ASP57D, CYS193A, GLN120A, GLN155A, GLN275A, GLN34D, GLN36D, GLU126A, GLU277A, GLU32D, GLU68D, GLY101A, GLY101D, GLY121A, GLY124A, GLY160A, GLY192A, HIS103A, HIS103D, HIS161A, HIS238A, HIS239A, HIS52D, ILE191A, ILE71A, LEU30D, LEU37D, LEU51D, LEU99A, LEU99D, LYS102A, LYS102D, LYS278A, PHE125A, PHE63D, PRO123A, PRO127A, PRO128A, PRO153A, PRO276A, PRO70A, PRO70D, SER162A, SER31D, SER53D, SER56D, SER98A, SER98D, THR122A, THR158A, THR159A, THR66D, THR97D, TRP235A, VAL156A, VAL58D, VAL67D
• C-D: ALA10C, ALA10D, ALA21C, ALA21D, ALA258C, ALA258D, ALA291C, ALA291D, ALA294C, ALA294D, ALA33C, ALA33D, ALA39C, ALA39D, ARG17C, ARG17D, ARG257C, ARG261C, ARG261D, ARG40C, ARG40D, ASN182C, ASN182D, ASN19C, ASN19D, ASP262C, ASP262D, ASP9C, ASP9D, GLN14C, GLN14D, GLN34C, GLN34D, GLN36C, GLN4C, GLN4D, GLU292C, GLU292D, GLU296C, GLU296D, GLU41C, GLU41D, GLY18C, GLY18D, GLY256C, GLY256D, GLY260C, GLY260D, GLY43C, GLY43D, HIS290C, HIS290D, HIS44C, HIS44D, HIS7C, HIS7D, ILE287C, ILE287D, ILE295C, ILE295D, ILE38C, ILE38D, LEU259C, LEU259D, LEU288C, LEU288D, LEU297C, LEU297D, LEU30C, LEU30D, LEU37C, LEU37D, LEU42C, LEU42D, LYS85C, LYS85D, PHE16C, PHE16D, PHE289C, PHE289D, PRO15C, PRO15D, PRO223C, PRO223D, PRO3C, PRO3D, PRO65D, SER13C, SER13D, SER20C, SER20D, TRP293C, TRP293D, TYR6C, TYR6D, VAL24C, VAL24D, VAL286C, VAL286D, VAL5C, VAL5D, VAL8C, VAL8D