1QVF
structure of a deacylated trna minihelix bound to the e site of the large ribosomal subunit of haloarcula marismortui
Total interactions analyzed 465
Total true interactions 27
Strongest Interaction Chains J-T
Int. Res. 54
Norm. En. per Res. -3.6891
Hub Node C(5)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-L 0.0 0.0 -0.0715 -0.0715 3 0 0 23 0 0 2
A-Y -78.1471 -20.9811 -280.184 -379.3123 111 20 12 12218 2 23 24
B-I -18.6503 -23.9337 -41.7322 -84.3162 34 3 0 1937 1 3 0
B-J -8.0033 10.1648 -52.1387 -49.9771 39 4 0 2620 0 11 20
B-T -14.1279 7.5488 -39.6599 -46.239 24 5 0 1314 0 5 5
C-K 0.0 0.0 -0.0035 -0.0035 2 0 0 5 0 0 3
C-N 0.0 7.1952 -46.323 -39.1277 24 2 0 1662 0 8 6
C-S 0.0 0.8374 -14.0438 -13.2064 14 0 0 809 0 3 10
C-X 0.0 0.0 -0.0125 -0.0125 2 0 0 10 0 0 1
C-Z 0.0 -14.1539 -40.074 -54.2279 16 2 0 1382 2 6 6
D-M -12.8674 -1.0188 -38.563 -52.4491 27 13 1 2206 0 13 20
E-I -11.9078 7.5088 -70.6245 -75.0234 26 4 1 2478 0 7 7
F-L -33.27 -11.5643 -175.367 -220.2013 73 13 3 7820 4 27 27
H-P 0.0 0.0 -0.0283 -0.0283 3 0 0 10 0 0 0
J-T -46.3451 -14.2648 -138.601 -199.2109 54 5 3 5669 1 17 19
K-L 0.0 0.0 -0.0118 -0.0118 2 0 0 11 0 0 1
K-N 0.0 0.0 -11.8609 -11.8609 25 0 0 898 0 5 5
K-X 0.0 0.0 -11.0341 -11.0341 14 1 0 376 0 0 12
K-2 0.0 0.0 -4.5598 -4.5598 5 0 0 200 0 0 2
L-2 0.0 -1.1646 -19.0821 -20.2467 20 10 0 1773 0 4 1
M-P -4.1777 2.6414 -95.7004 -97.2367 57 6 3 4894 0 10 16
Q-W 0.0 0.0 -0.0878 -0.0878 3 0 0 7 0 0 8
Q-1 0.0 0.0 -0.0841 -0.0841 4 0 0 28 0 0 1
R-U 0.0 -3.3313 -58.4287 -61.76 37 2 5 3022 1 11 13
R-1 -13.8621 -2.7975 -44.7791 -61.4387 25 3 0 2246 0 19 11
S-1 0.0 0.0 -0.0426 -0.0426 2 0 0 8 0 2 2
Z-1 0.0 -5.3192 -44.1393 -49.4585 23 8 0 1709 0 19 16